EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

Publications

Total: 6 publication(s)

2020

Tekman M, Batut B, Ostrovsky A, Antoniewski C, Clements D, Ramirez F, Etherington GJ, Hotz HR, Scholtalbers J, Manning JR, Bellenger L, Doyle MA, Heydarian M, Huang N, Soranzo N, Moreno P, Mautner S, Papatheodorou I, Nekrutenko A, Taylor J, Blankenberg D, Backofen R, Grüning B. (2020)

A single-cell RNA-sequencing training and analysis suite using the Galaxy framework.

Gigascience 9(10) doi: 10.1093/gigascience/giaa102
Europe PMC | doi


2016

Girardot C, Scholtalbers J, Sauer S, Su SY, Furlong EE. (2016)

Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers.

BMC Bioinformatics 17(1) doi: 10.1186/s12859-016-1284-2
Europe PMC | doi


2015

Scholtalbers J, Boegel S, Bukur T, Byl M, Goerges S, Sorn P, Loewer M, Sahin U, Castle JC. (2015)

TCLP: an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression.

Genome Med 7(1) doi: 10.1186/s13073-015-0240-5
Europe PMC | doi

Khakimov B, Kuzina V, Erthmann PØ, Fukushima EO, Augustin JM, Olsen CE, Scholtalbers J, Volpin H, Andersen SB, Hauser TP, Muranaka T, Bak S. (2015)

Identification and genome organization of saponin pathway genes from a wild crucifer, and their use for transient production of saponins in Nicotiana benthamiana.

Plant J. 84(3):478-490. doi: 10.1111/tpj.13012
Europe PMC | doi

Boegel S, Scholtalbers J, Löwer M, Sahin U, Castle JC. (2015)

In Silico HLA Typing Using Standard RNA-Seq Sequence Reads.

Methods Mol. Biol. 1310:247-258. doi: 10.1007/978-1-4939-2690-9_20
Europe PMC | doi


2013

Scholtalbers J, Rößler J, Sorn P, de Graaf J, Boisguérin V, Castle J, Sahin U. (2013)

Galaxy LIMS for next-generation sequencing.

Bioinformatics 29(9):1233-1234. doi: 10.1093/bioinformatics/btt115
Europe PMC | doi