EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

Email: dmytro.dziuba@embl.de

Publications

Total: 12 publication(s)

2017

Shvadchak VV, Kucherak O, Afitska K, Dziuba D, Yushchenko DA. (2017)

Environmentally sensitive probes for monitoring protein-membrane interactions at nanomolar concentrations.

Biochim. Biophys. Acta 1859(5):852-859. doi: 10.1016/j.bbamem.2017.01.021
Europe PMC | doi


2016

Dziuba D, Pospisil P, Matyasovsky J, Brynda J, Nachtigallova D, Rulisek L, Pohl R, Hof M, Hocek M. (2016)

Solvatochromic fluorene-linked nucleoside and DNA as color-changing fluorescent probes for sensing interactions

Chem Sci 7:5775-5785. doi: 10.1039/c6sc02548j
doi

Barthes NPF, Gavvala K, Dziuba D, Bonhomme D, Karpenko IA, Dabert-Gay AS, Debayle D, Demchenko AP, Benhida R, Michel BY, Mely Y, Burger A. (2016)

Dual emissive analogue of deoxyuridine as a sensitive hydration-reporting probe for discriminating mismatched from matched DNA and DNA/DNA from DNA/RNA duplexes

J Mater Chem C Mater Opt Electron Devices 4:3010-3017. doi: 10.1039/c5tc03427b
doi

Sabat N, Naus P, Matyasovsky J, Dziuba D, Slavetinska LP, Hocek M. (2016)

Synthesis of Fluorescent 2-Substituted 6-(Het)aryl-7-deazapurine Bases {4-(Het)aryl-pyrrolo[2,3-d]pyrimidines} by Aqueous Suzuki-Miyaura Cross-Coupling Reactions

Synthesis (Stuttg) 48:1029-1045. doi: 10.1055/s-0035-1561287
doi

Dziuba D, Jurkiewicz P, Cebecauer M, Hof M, Hocek M. (2016)

A Rotational BODIPY Nucleotide: An Environment-Sensitive Fluorescence-Lifetime Probe for DNA Interactions and Applications in Live-Cell Microscopy

Angew. Chem. Int. Ed. Engl. 55:174-178. doi: 10.1002/anie.201507922
doi


2015

Dziuba D, Pohl R, Hocek M. (2015)

Polymerase synthesis of DNA labelled with benzylidene cyanoacetamide-based fluorescent molecular rotors: fluorescent light-up probes for DNA-binding proteins

Chem. Commun. (Camb.) 51:4880-4882. doi: 10.1039/c5cc00530b
doi

Menova P, Dziuba D, Guixens-Gallardo P, Jurkiewicz P, Hof M, Hocek M. (2015)

Fluorescence Quenching in Oligonucleotides Containing 7-Substituted 7-Deazaguanine Bases Prepared by the Nicking Enzyme Amplification Reaction

Bioconjug. Chem. 26:361-366. doi: 10.1021/acs.bioconjchem.5b00006
doi

Barthes NPF, Karpenko IA, Dziuba D, Spadafora M, Auffret J, Demchenko AP, Mely Y, Benhida R, Michel BY, Burger A. (2015)

Development of environmentally sensitive fluorescent and dual emissive deoxyuridine analogues

RSC Adv 5:33536-33545. doi: 10.1039/c5ra02709h
doi


2014

Dziuba D, Pohl R, Hocek M. (2014)

Bodipy-Labeled Nucleoside Triphosphates for Polymerase Synthesis of Fluorescent DNA

Bioconjug. Chem. 25(11):1984-1995. doi: 10.1021/bc5003554
doi

Dziuba D, Karpenko IA, Barthes NPF, Michel BY, Klymchenko AS, Benhida R, Demchenko AP, Mely Y, Burger A. (2014)

Rational Design of a Solvatochromic Fluorescent Uracil Analogue with a Dual-Band Ratiometric Response Based on 3-Hydroxychromone

Chemistry 20(7):1998-2009. doi: 10.1002/chem.201303399
doi


2012

Dziuba D, Postupalenko VY, Spadafora M, Klymchenko AS, Guerineau V, Mely Y, Benhida R, Burger A. (2012)

A Universal Nucleoside with Strong Two-Band Switchable Fluorescence and Sensitivity to the Environment for Investigating DNA Interactions

J. Am. Chem. Soc. 134(24):10209-10213. doi: 10.1021/ja3030388
doi


2011

Dziuba D, Benhida R, Burger A. (2011)

A Mild and Efficient Protocol for the Protection of 3-Hydroxychromones Under Phase-Transfer Catalysis

Synthesis (Stuttg) 2159-2164. doi: 10.1055/s-0030-1260034
doi