EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany


  • PhD, University College Dublin.
    Postdoctoral research at Stanford University.
    Group leader at EMBL since September 2002.
    Senior scientist since 2009.
    Head of Genome Biology Unit since 2009.
    ERC Advanced Investigator 2013–2018 and 2019–2023.
    EMBO Member since 2013.
    Elected member Academia Europaea 2016.


Total: 88 publication(s)


Cavalheiro GR, Pollex T, Furlong EE. (2021)

To loop or not to loop: what is the role of TADs in enhancer function and gene regulation?

Curr Opin Genet Dev 67:119-129. doi: 10.1016/j.gde.2020.12.015
Europe PMC | doi


Floc'hlay S, Wong E, Zhao B, Viales RR, Thomas-Chollier M, Thieffry D, Garfield DA, Furlong EEM. (2020)

Cis-acting variation is common across regulatory layers but is often buffered during embryonic development.

Genome Res 31(2) doi: 10.1101/gr.266338.120
Europe PMC | doi

Reddington JP, Garfield DA, Sigalova OM, Karabacak Calviello A, Marco-Ferreres R, Girardot C, Viales RR, Degner JF, Ohler U, Furlong EEM. (2020)

Lineage-resolved enhancer and promoter usage during a time course of embryogenesis.

Dev Cell 55(5):648-664.e9. doi: 10.1016/j.devcel.2020.10.009
Europe PMC | doi

Sigalova OM, Shaeiri A, Forneris M, Furlong EE, Zaugg JB. (2020)

Predictive features of gene expression variation reveal mechanistic link with differential expression.

Mol. Syst. Biol. 16(8) doi: 10.15252/msb.20209539
Europe PMC | doi

McGuire AL, Gabriel S, Tishkoff SA, Wonkam A, Chakravarti A, Furlong EEM, Treutlein B, Meissner A, Chang HY, López-Bigas N, Segal E, Kim JS. (2020)

The road ahead in genetics and genomics.

Nat Rev Genet 21(10):581-596. doi: 10.1038/s41576-020-0272-6
Europe PMC | doi


Viets K, Sauria MEG, Chernoff C, Rodriguez Viales R, Echterling M, Anderson C, Tran S, Dove A, Goyal R, Voortman L, Gordus A, Furlong EEM, Taylor J, Johnston RJ. (2019)

Characterization of button loci that promote homologous chromosome pairing and cell-type-specific interchromosomal gene regulation.

Dev. Cell 51(3):341-356.e7. doi: 10.1016/j.devcel.2019.09.007
Europe PMC | doi

Mir M, Bickmore W, Furlong EEM, Narlikar G. (2019)

Chromatin topology, condensates and gene regulation: shifting paradigms or just a phase?

Development 146(19) doi: 10.1242/dev.182766
Europe PMC | doi

Zhou J, Schor IE, Yao V, Theesfeld CL, Marco-Ferreres R, Tadych A, Furlong EEM, Troyanskaya OG. (2019)

Accurate genome-wide predictions of spatio-temporal gene expression during embryonic development.

PLoS Genet. 15(9) doi: 10.1371/journal.pgen.1008382
Europe PMC | doi

Ghavi-Helm Y, Jankowski A, Meiers S, Viales RR, Korbel JO, Furlong EEM. (2019)

Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression.

Nat. Genet. 51(8) doi: 10.1038/s41588-019-0462-3
Europe PMC | doi

Khoueiry P, Ward Gahlawat A, Petretich M, Michon AM, Simola D, Lam E, Furlong EE, Benes V, Dawson MA, Prinjha RK, Drewes G, Grandi P. (2019)

BRD4 bimodal binding at promoters and drug-induced displacement at Pol II pause sites associates with I-BET sensitivity.

Epigenetics Chromatin 12(1) doi: 10.1186/s13072-019-0286-5
Europe PMC | doi

Peng PC, Khoueiry P, Girardot C, Reddington JP, Garfield DA, Furlong EEM, Sinha S. (2019)

The role of chromatin accessibility in cis-regulatory evolution.

Genome Biol Evol 11(7) doi: 10.1093/gbe/evz103
Europe PMC | doi

Wu WH, Kuo TH, Kao CW, Girardot C, Hung SJ, Liu T, Furlong EEM, Liu YH. (2019)

Expanding the mesodermal transcriptional network by genome-wide identification of Zinc finger homeodomain 1 (Zfh1) targets.

FEBS Lett. 593(14):1698-1710. doi: 10.1002/1873-3468.13443
Europe PMC | doi

van Steensel B, Furlong EEM. (2019)

The role of transcription in shaping the spatial organization of the genome.

Nat. Rev. Mol. Cell Biol. 20(6):327-337. doi: 10.1038/s41580-019-0114-6
Europe PMC | doi


Schor IE, Bussotti G, Maleš M, Forneris M, Viales RR, Enright AJ, Furlong EEM. (2018)

Non-coding RNA expression, function, and variation during Drosophila embryogenesis.

Curr. Biol. 28(22):3547-3561. doi: 10.1016/j.cub.2018.09.026
Europe PMC | doi

Gambetta MC, Furlong EEM. (2018)

The Insulator Protein CTCF Is Required for Correct Hox Gene Expression, but Not for Embryonic Development in Drosophila.

Genetics 210(1) doi: 10.1534/genetics.118.301350
Europe PMC | doi

Furlong EEM, Levine M. (2018)

Developmental enhancers and chromosome topology.

Science 361(6409):1341-1345. doi: 10.1126/science.aau0320
Europe PMC | doi

Utharala R, Tseng Q, Furlong EEM, Merten CA. (2018)

A versatile, low-cost, multiway microfluidic sorter for droplets, cells, and embryos.

Anal Chem 90(10):5982-5988. doi: 10.1021/acs.analchem.7b04689
Europe PMC | doi

Cusanovich DA, Reddington JP, Garfield DA, Daza RM, Aghamirzaie D, Marco-Ferreres R, Pliner HA, Christiansen L, Qiu X, Steemers FJ, Trapnell C, Shendure J, Furlong EEM. (2018)

The cis-regulatory dynamics of embryonic development at single-cell resolution.

Nature 555(7697):538-542. doi: 10.1038/nature25981
Europe PMC | doi

Lehmann LH, Jebessa ZH, Kreusser MM, Horsch A, He T, Kronlage M, Dewenter M, Sramek V, Oehl U, Krebs-Haupenthal J, von der Lieth AH, Schmidt A, Sun Q, Ritterhoff J, Finke D, Völkers M, Jungmann A, Sauer SW, Thiel C, Nickel A, Kohlhaas M, Schäfer M, Sticht C, Maack C, Gretz N, Wagner M, El-Armouche A, Maier LS, Londoño JEC, Meder B, Freichel M, Gröne HJ, Most P, Müller OJ, Herzig S, Furlong EEM, Katus HA, Backs J. (2018)

A proteolytic fragment of histone deacetylase 4 protects the heart from failure by regulating the hexosamine biosynthetic pathway.

Nat. Med. 24(1):62-72. doi: 10.1038/nm.4452
Europe PMC | doi

Mikhaylichenko O, Bondarenko V, Harnett D, Schor IE, Males M, Viales RR, Furlong EEM. (2018)

The degree of enhancer or promoter activity is reflected by the levels and directionality of eRNA transcription.

Genes Dev 32(1):42-57. doi: 10.1101/gad.308619.117
Europe PMC | doi


Zolotarev N, Maksimenko O, Kyrchanova O, Sokolinskaya E, Osadchiy I, Girardot C, Bonchuk A, Ciglar L, Furlong EEM, Georgiev P. (2017)

Opbp is a new architectural/insulator protein required for ribosomal gene expression.

Nucleic Acids Res. 45(21):12285-12300. doi: 10.1093/nar/gkx840
Europe PMC | doi

Khoueiry P, Girardot C, Ciglar L, Peng PC, Gustafson EH, Sinha S, Furlong EE. (2017)

Uncoupling evolutionary changes in DNA sequence, transcription factor occupancy and enhancer activity.

Elife 6 doi: 10.7554/eLife.28440
Europe PMC | doi

Schauer T, Ghavi-Helm Y, Sexton T, Albig C, Regnard C, Cavalli G, Furlong EE, Becker PB. (2017)

Chromosome topology guides the Drosophila Dosage Compensation Complex for target gene activation.

EMBO Rep. 18(10) doi: 10.15252/embr.201744292
Europe PMC | doi

Monfort M, Furlong EE, Girardot C. (2017)

Dynamix: Dynamic visualization by automatic selection of informative tracks from hundreds of genomic data sets.

Bioinformatics 33(14) doi: 10.1093/bioinformatics/btx141
Europe PMC | doi

Pollex T, Furlong EEM. (2017)

Correlation Does Not Imply Causation: Histone Methyltransferases, but Not Histone Methylation, SET the Stage for Enhancer Activation

Mol Cell 66(4):439-441. doi: 10.1016/j.molcel.2017.05.005
Europe PMC | doi

Schor IE, Degner JF, Harnett D, Cannavò E, Casale FP, Shim H, Garfield DA, Birney E, Stephens M, Stegle O, Furlong EE. (2017)

Promoter shape varies across populations and affects promoter evolution and expression noise.

Nat. Genet. 49(4):550-558. doi: 10.1038/ng.3791
Europe PMC | doi

Erceg J, Pakozdi T, Marco-Ferreres R, Ghavi-Helm Y, Girardot C, Bracken AP, Furlong EE. (2017)

Dual functionality of cis-regulatory elements as developmental enhancers and Polycomb response elements.

Genes Dev. 31(6):590-602. doi: 10.1101/gad.292870.116
Europe PMC | doi

Cannavò E, Koelling N, Harnett D, Garfield D, Casale FP, Ciglar L, Gustafson HE, Viales RR, Marco-Ferreres R, Degner JF, Zhao B, Stegle O, Birney E, Furlong EE. (2017)

Genetic variants regulating expression levels and isoform diversity during embryogenesis.

Nature 541(7637):402-406. doi: 10.1038/nature20802
Europe PMC | doi


Seyres D, Ghavi-Helm Y, Junion G, Taghli-Lamallem O, Guichard C, Röder L, Girardot C, Furlong EE, Perrin L. (2016)

Identification and in silico modeling of enhancers reveals new features of the cardiac differentiation network.

Development 143(23):4533-4542. doi: 10.1242/dev.140822
Europe PMC | doi

Ghavi-Helm Y, Zhao B, Furlong EE. (2016)

Chromatin Immunoprecipitation for Analyzing Transcription Factor Binding and Histone Modifications in Drosophila.

Methods Mol. Biol. 1478:263-277. doi: 10.1007/978-1-4939-6371-3_16
Europe PMC | doi

Girardot C, Scholtalbers J, Sauer S, Su SY, Furlong EE. (2016)

Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers.

BMC Bioinformatics 17(1) doi: 10.1186/s12859-016-1284-2
Europe PMC | doi

Ghavi-Helm Y, Klein FA, Pakozdi T, Ciglar L, Noordermeer D, Huber W, Furlong EEM. (2016)

Corrigendum: Enhancer loops appear stable during development and are associated with paused polymerase

NATURE 537(7619) doi: 10.1038/nature18962
Europe PMC | doi

Mbodj A, Gustafson EH, Ciglar L, Junion G, Gonzalez A, Girardot C, Perrin L, Furlong EE, Thieffry D. (2016)

Qualitative Dynamical Modelling Can Formally Explain Mesoderm Specification and Predict Novel Developmental Phenotypes.

PLoS Comput. Biol. 12(9) doi: 10.1371/journal.pcbi.1005073
Europe PMC | doi

Tica J, Lee E, Untergasser A, Meiers S, Garfield DA, Gokcumen O, Furlong EE, Park PJ, Stütz AM, Korbel JO. (2016)

Next-generation sequencing-based detection of germline L1-mediated transductions.

BMC Genomics 17(1) doi: 10.1186/s12864-016-2670-x
Europe PMC | doi

Cannavò E, Khoueiry P, Garfield DA, Geeleher P, Zichner T, Gustafson EH, Ciglar L, Korbel JO, Furlong EE. (2016)

Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks.

Curr. Biol. 26(1):38-51. doi: 10.1016/j.cub.2015.11.034
Europe PMC | doi


Klein FA, Pakozdi T, Anders S, Ghavi-Helm Y, Furlong EE, Huber W. (2015)

FourCSeq: Analysis of 4C sequencing data.

Bioinformatics 31(19):3085-3091. doi: 10.1093/bioinformatics/btv335
Europe PMC | doi

Nitta KR, Jolma A, Yin Y, Morgunova E, Kivioja T, Akhtar J, Hens K, Toivonen J, Deplancke B, Furlong EE, Taipale J. (2015)

Conservation of transcription factor binding specificities across 600 million years of bilateria evolution.

Elife 4 doi: 10.7554/elife.04837
Europe PMC | doi


Hughes CS, Foehr S, Garfield DA, Furlong EE, Steinmetz LM, Krijgsveld J. (2014)

Ultrasensitive proteome analysis using paramagnetic bead technology.

Mol. Syst. Biol. 10(10) doi: 10.15252/msb.20145625
Europe PMC | doi

Ghavi-Helm Y, Klein FA, Pakozdi T, Ciglar L, Noordermeer D, Huber W, Furlong EE. (2014)

Enhancer loops appear stable during development and are associated with paused polymerase

Nature 512(7512):96-100. doi: 10.1038/nature13417
Europe PMC | doi

Ciglar L, Girardot C, Wilczyński B, Braun M, Furlong EE. (2014)

Coordinated repression and activation of two transcriptional programs stabilizes cell fate during myogenesis

Development 141(13):2633-2643. doi: 10.1242/dev.101956
Europe PMC | doi

Rembold M, Ciglar L, Yáñez-Cuna JO, Zinzen RP, Girardot C, Jain A, Welte MA, Stark A, Leptin M, Furlong EE. (2014)

A conserved role for Snail as a potentiator of active transcription

Genes Dev. 28(2):167-181. doi: 10.1101/gad.230953.113
Europe PMC | doi

Erceg J, Saunders TE, Girardot C, Devos DP, Hufnagel L, Furlong EE. (2014)

Subtle changes in motif positioning cause tissue-specific effects on robustness of an enhancer's activity

PLoS Genet. 10(1):e1004060. doi: 10.1371/journal.pgen.1004060
Europe PMC | doi


Mbodj A, Junion G, Brun C, Furlong EE, Thieffry D. (2013)

Logical modelling of Drosophila signalling pathways

Mol Biosyst 9(9):2248-2258. doi: 10.1039/c3mb70187e
Europe PMC | doi

Zichner T, Garfield DA, Rausch T, Stütz AM, Cannavó E, Braun M, Furlong EE, Korbel JO. (2013)

Impact of genomic structural variation in Drosophila melanogaster based on population-scale sequencing

Genome Res. 23(3):568-579. doi: 10.1101/gr.142646.112
Europe PMC | doi


Tseng Q, Lomonosov AM, Furlong EE, Merten CA. (2012)

Fragmentation of DNA in a sub-microliter microfluidic sonication device

Lab Chip 12(22):4677-4682. doi: 10.1039/c2lc40595d
Europe PMC | doi

Delhomme N, Padioleau I, Furlong EE, Steinmetz LM. (2012)

easyRNASeq: a bioconductor package for processing RNA-Seq data

Bioinformatics 28(19):2532-2533. doi: 10.1093/bioinformatics/bts477
Europe PMC | doi

Spitz F, Furlong EE. (2012)

Transcription factors: from enhancer binding to developmental control

Nat. Rev. Genet. 13(9):613-626. doi: 10.1038/nrg3207
Europe PMC | doi

Bonn S, Zinzen RP, Perez-Gonzalez A, Riddell A, Gavin AC, Furlong EE. (2012)

Cell type-specific chromatin immunoprecipitation from multicellular complex samples using BiTS-ChIP

Nat Protoc 7(5):978-994. doi: 10.1038/nprot.2012.049
Europe PMC | doi

Bonn S, Zinzen RP, Girardot C, Gustafson EH, Perez-Gonzalez A, Delhomme N, Ghavi-Helm Y, Wilczyński B, Riddell A, Furlong EE. (2012)

Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development

Nat. Genet. 44(2):148-156. doi: 10.1038/ng.1064
Europe PMC | doi

Junion G, Spivakov M, Girardot C, Braun M, Gustafson EH, Birney E, Furlong EE. (2012)

A transcription factor collective defines cardiac cell fate and reflects lineage history

Cell 148(3):473-486. doi: 10.1016/j.cell.2012.01.030
Europe PMC | doi

Ghavi-Helm Y, Furlong EE. (2012)

Analyzing transcription factor occupancy during embryo development using ChIP-seq

Methods Mol. Biol. 786:229-245. doi: 10.1007/978-1-61779-292-2_14
Europe PMC | doi

Spivakov M, Akhtar J, Kheradpour P, Beal K, Girardot C, Koscielny G, Herrero J, Kellis M, Furlong EE, Birney E. (2012)

Analysis of variation at transcription factor binding sites in Drosophila and humans

Genome Biol. 13(9):R49. doi: 10.1186/gb-2012-13-9-r49
Europe PMC | doi

Wilczynski B, Liu YH, Yeo ZX, Furlong EE. (2012)

Predicting spatial and temporal gene expression using an integrative model of transcription factor occupancy and chromatin state

PLoS Comput. Biol. 8(12):e1002798. doi: 10.1371/journal.pcbi.1002798
Europe PMC | doi


Furlong EE. (2011)

Molecular biology: A fly in the face of genomics

Nature 471(7339):458-459. doi: 10.1038/471458a
Europe PMC | doi


Furlong EE. (2010)

The importance of being specified: cell fate decisions and their role in cell biology

Mol. Biol. Cell 21(22):3797-3798. doi: 10.1091/mbc.e10-05-0436
Europe PMC | doi

Cunha PM, Sandmann T, Gustafson EH, Ciglar L, Eichenlaub MP, Furlong EE. (2010)

Combinatorial binding leads to diverse regulatory responses: Lmd is a tissue-specific modulator of Mef2 activity

PLoS Genet. 6(7):e1001014. doi: 10.1371/journal.pgen.1001014
Europe PMC | doi

Wilczyński B, Furlong EE. (2010)

Dynamic CRM occupancy reflects a temporal map of developmental progression

Mol. Syst. Biol. 6:383. doi: 10.1038/msb.2010.35
Europe PMC | doi

Honkela A, Girardot C, Gustafson EH, Liu YH, Furlong EE, Lawrence ND, Rattray M. (2010)

Model-based method for transcription factor target identification with limited data

Proc. Natl. Acad. Sci. U.S.A. 107(17):7793-7798. doi: 10.1073/pnas.0914285107
Europe PMC | doi

Wilczynski B, Furlong EE. (2010)

Challenges for modeling global gene regulatory networks during development: insights from Drosophila

Dev. Biol. 340(2):161-169. doi: 10.1016/j.ydbio.2009.10.032
Europe PMC | doi


Ciglar L, Furlong EE. (2009)

Conservation and divergence in developmental networks: a view from Drosophila myogenesis

Curr. Opin. Cell Biol. 21(6):754-760. doi: 10.1016/j.ceb.2009.10.001
Europe PMC | doi

Zinzen RP, Girardot C, Gagneur J, Braun M, Furlong EE. (2009)

Combinatorial binding predicts spatio-temporal cis-regulatory activity

Nature 462(7269):65-70. doi: 10.1038/nature08531
Europe PMC | doi

Liu YH, Jakobsen JS, Valentin G, Amarantos I, Gilmour DT, Furlong EE. (2009)

A systematic analysis of Tinman function reveals Eya and JAK-STAT signaling as essential regulators of muscle development

Dev. Cell 16(2):280-291. doi: 10.1016/j.devcel.2009.01.006
Europe PMC | doi


Bonn S, Furlong EE. (2008)

cis-Regulatory networks during development: a view of Drosophila

Curr. Opin. Genet. Dev. 18(6):513-520. doi: 10.1016/j.gde.2008.09.005
Europe PMC | doi

Oktaba K, Gutiérrez L, Gagneur J, Girardot C, Sengupta AK, Furlong EE, Müller J. (2008)

Dynamic regulation by polycomb group protein complexes controls pattern formation and the cell cycle in Drosophila

Dev. Cell 15(6):877-889. doi: 10.1016/j.devcel.2008.10.005
Europe PMC | doi

Furlong EE. (2008)

A topographical map of spatiotemporal patterns of gene expression

Dev. Cell 14(5):639-640. doi: 10.1016/j.devcel.2008.04.007
Europe PMC | doi

Haudry Y, Berube H, Letunic I, Weeber PD, Gagneur J, Girardot C, Kapushesky M, Arendt D, Bork P, Brazma A, Furlong EE, Wittbrodt J, Henrich T. (2008)

4DXpress: a database for cross-species expression pattern comparisons

Nucleic Acids Res. 36(Database issue):D847-53. doi: 10.1093/nar/gkm797
Europe PMC | doi

Shah PK, Tripathi LP, Jensen LJ, Gahnim M, Mason C, Furlong EE, Rodrigues V, White KP, Bork P, Sowdhamini R. (2008)

Enhanced function annotations for Drosophila serine proteases: a case study for systematic annotation of multi-member gene families

Gene 407(1-2):199-215. doi: 10.1016/j.gene.2007.10.012
Europe PMC | doi

Zinzen RP, Furlong EE. (2008)

Divergence in cis-regulatory networks: taking the 'species' out of cross-species analysis

Genome Biol. 9(11):240. doi: 10.1186/gb-2008-9-11-240
Europe PMC | doi


Jakobsen JS, Braun M, Astorga J, Gustafson EH, Sandmann T, Karzynski M, Carlsson P, Furlong EE. (2007)

Temporal ChIP-on-chip reveals Biniou as a universal regulator of the visceral muscle transcriptional network

Genes Dev. 21(19):2448-2460. doi: 10.1101/gad.437607
Europe PMC | doi

Girardot C, Sklyar O, Grosz S, Huber W, Furlong EE. (2007)

CoCo: a web application to display, store and curate ChIP-on-chip data integrated with diverse types of gene expression data

Bioinformatics 23(6):771-773. doi: 10.1093/bioinformatics/btl641
Europe PMC | doi

Sandmann T, Girardot C, Brehme M, Tongprasit W, Stolc V, Furlong EE. (2007)

A core transcriptional network for early mesoderm development in Drosophila melanogaster

Genes Dev. 21(4):436-449. doi: 10.1101/gad.1509007
Europe PMC | doi

Hooper SD, Boué S, Krause R, Jensen LJ, Mason CE, Ghanim M, White KP, Furlong EE, Bork P. (2007)

Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis

Mol. Syst. Biol. 3:72. doi: 10.1038/msb4100112
Europe PMC | doi


Zimmermann G, Furlong EE, Suyama K, Scott MP. (2006)

Mes2, a MADF-containing transcription factor essential for Drosophila development

Dev. Dyn. 235(12):3387-3395. doi: 10.1002/dvdy.20970
Europe PMC | doi

Spitz F, Furlong EE. (2006)

Genomics and development: Taking developmental biology to new heights

Dev. Cell 11(4):451-457. doi: 10.1016/j.devcel.2006.09.013
Europe PMC | doi

Sandmann T, Jensen LJ, Jakobsen JS, Karzynski MM, Eichenlaub MP, Bork P, Furlong EE. (2006)

A temporal map of transcription factor activity: mef2 directly regulates target genes at all stages of muscle development

Dev. Cell 10(6):797-807. doi: 10.1016/j.devcel.2006.04.009
Europe PMC | doi

Brandt A, Papagiannouli F, Wagner N, Wilsch-Bräuninger M, Braun M, Furlong EE, Loserth S, Wenzl C, Pilot F, Vogt N, Lecuit T, Krohne G, Grosshans J. (2006)

Developmental control of nuclear size and shape by Kugelkern and Kurzkern

Curr. Biol. 16(6):543-552. doi: 10.1016/j.cub.2006.01.051
Europe PMC | doi

Furlong EE. (2006)

Whole Genome Approaches to Studying Drosophila Muscle Development.

In: Sink H (ed.), Muscle Development in Drosophila. Molecular Biology Intelligence Unit. Springer, New York. pp 157-168.doi: 10.1007/0-387-32963-3_13
Europe PMC | doi

Sandmann T, Jakobsen JS, Furlong EE. (2006)

ChIP-on-chip protocol for genome-wide analysis of transcription factor binding in Drosophila melanogaster embryos

Nat Protoc 1(6):2839-2855. doi: 10.1038/nprot.2006.383
Europe PMC | doi


Furlong EE. (2005)

A functional genomics approach to identify new regulators of Wnt signaling

Dev. Cell 8(5):624-626. doi: 10.1016/j.devcel.2005.04.006
Europe PMC | doi

Qiu F, Brendel S, Cunha PM, Astola N, Song B, Furlong EE, Leonard KR, Bullard B. (2005)

Myofilin, a protein in the thick filaments of insect muscle

J. Cell. Sci. 118(Pt 7):1527-1536. doi: 10.1242/jcs.02281
Europe PMC | doi


Furlong EE. (2004)

Integrating transcriptional and signalling networks during muscle development

Curr. Opin. Genet. Dev. 14(4):343-350. doi: 10.1016/j.gde.2004.06.011
Europe PMC | doi

Hollich V, Johnson E, Furlong EE, Beckmann B, Carlson J, Celniker SE, Hoheisel JD. (2004)

Creation of a minimal tiling path of genomic clones for Drosophila: provision of a common resource

BioTechniques 37(2):282-284. doi: 10.2144/3702A0282
Europe PMC | doi


Artero R, Furlong EE, Beckett K, Scott MP, Baylies M. (2003)

Notch and Ras signaling pathway effector genes expressed in fusion competent and founder cells during Drosophila myogenesis

Development 130(25):6257-6272. doi: 10.1242/dev.00843
Europe PMC | doi


Arbeitman MN, Furlong EE, Imam F, Johnson E, Null BH, Baker BS, Krasnow MA, Scott MP, Davis RW, White KP. (2002)

Gene expression during the life cycle of Drosophila melanogaster

Science 297(5590):2270-2275. doi: 10.1126/science.1072152
Europe PMC | doi


Furlong EE, Andersen EC, Null B, White KP, Scott MP. (2001)

Patterns of gene expression during Drosophila mesoderm development

Science 293(5535):1629-1633. doi: 10.1126/science.1062660
Europe PMC | doi

Furlong EE, Profitt D, Scott MP. (2001)

Automated sorting of live transgenic embryos

Nat. Biotechnol. 19(2):153-156. doi: 10.1038/84422
Europe PMC | doi


Furlong EE, Keon NK, Thornton FD, Rein T, Martin F. (1996)

Expression of a 74-kDa nuclear factor 1 (NF1) protein is induced in mouse mammary gland involution. Involution-enhanced occupation of a twin NF1 binding element in the testosterone-repressed prostate message-2/clusterin promoter

J. Biol. Chem. 271(47):29688-29697. doi: 10.1074/jbc.271.47.29688
Europe PMC | doi

Furlong EE, Rein T, Martin F. (1996)

YY1 and NF1 both activate the human p53 promoter by alternatively binding to a composite element, and YY1 and E1A cooperate to amplify p53 promoter activity

Mol. Cell. Biol. 16(10):5933-5945.
Europe PMC