EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

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Total: 13 publication(s)


Erceg J, Pakozdi T, Marco-Ferreres R, Ghavi-Helm Y, Girardot C, Bracken AP, Furlong EE. (2017)

Dual functionality of cis-regulatory elements as developmental enhancers and Polycomb response elements.

Genes Dev. 31(6):590-602. doi: 10.1101/gad.292870.116
Europe PMC | doi


Seyres D, Ghavi-Helm Y, Junion G, Taghli-Lamallem O, Guichard C, Röder L, Girardot C, Furlong EE, Perrin L. (2016)

Identification and in silico modeling of enhancers reveals new features of the cardiac differentiation network.

Development 143(23):4533-4542. doi: 10.1242/dev.140822
Europe PMC | doi

Ghavi-Helm Y, Zhao B, Furlong EE. (2016)

Chromatin Immunoprecipitation for Analyzing Transcription Factor Binding and Histone Modifications in Drosophila.

Methods Mol. Biol. 1478:263-277. doi: 10.1007/978-1-4939-6371-3_16
Europe PMC | doi


Klein FA, Pakozdi T, Anders S, Ghavi-Helm Y, Furlong EE, Huber W. (2015)

FourCSeq: Analysis of 4C sequencing data.

Bioinformatics 31(19):3085-3091. doi: 10.1093/bioinformatics/btv335
Europe PMC | doi


Pinskaya M, Ghavi-Helm Y, Mariotte-Labarre S, Morillon A, Soutourina J, Werner M. (2014)

PHD and TFIIS-Like domains of the Bye1 transcription factor determine its multivalent genomic distribution.

PLoS ONE 9(7):e102464. doi: 10.1371/journal.pone.0102464
Europe PMC | doi

Ghavi-Helm Y, Klein FA, Pakozdi T, Ciglar L, Noordermeer D, Huber W, Furlong EE. (2014)

Enhancer loops appear stable during development and are associated with paused polymerase

Nature 512(7512):96-100. doi: 10.1038/nature13417
Europe PMC | doi


Bonn S, Zinzen RP, Girardot C, Gustafson EH, Perez-Gonzalez A, Delhomme N, Ghavi-Helm Y, Wilczyński B, Riddell A, Furlong EE. (2012)

Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development

Nat. Genet. 44(2):148-156. doi: 10.1038/ng.1064
Europe PMC | doi

Carrière L, Graziani S, Alibert O, Ghavi-Helm Y, Boussouar F, Humbertclaude H, Jounier S, Aude JC, Keime C, Murvai J, Foglio M, Gut M, Gut I, Lathrop M, Soutourina J, Gérard M, Werner M. (2012)

Genomic binding of Pol III transcription machinery and relationship with TFIIS transcription factor distribution in mouse embryonic stem cells.

Nucleic Acids Res. 40(1):270-283. doi: 10.1093/nar/gkr737
Europe PMC | doi

Ghavi-Helm Y, Furlong EE. (2012)

Analyzing transcription factor occupancy during embryo development using ChIP-seq

Methods Mol. Biol. 786:229-245. doi: 10.1007/978-1-61779-292-2_14
Europe PMC | doi


Kwapisz M, Wery M, Després D, Ghavi-Helm Y, Soutourina J, Thuriaux P, Lacroute F. (2008)

Mutations of RNA polymerase II activate key genes of the nucleoside triphosphate biosynthetic pathways

EMBO J. 27(18):2411-2421. doi: 10.1038/emboj.2008.165
Europe PMC | doi

Esnault C, Ghavi-Helm Y, Brun S, Soutourina J, Van Berkum N, Boschiero C, Holstege F, Werner M. (2008)

Mediator-dependent recruitment of TFIIH modules in preinitiation complex

Mol. Cell 31(3):337-346. doi: 10.1016/j.molcel.2008.06.021
Europe PMC | doi

Ghavi-Helm Y, Michaut M, Acker J, Aude JC, Thuriaux P, Werner M, Soutourina J. (2008)

Genome-wide location analysis reveals a role of TFIIS in RNA polymerase III transcription

Genes Dev. 22(14):1934-1947. doi: 10.1101/gad.471908
Europe PMC | doi

Cazalet C, Jarraud S, Ghavi-Helm Y, Kunst F, Glaser P, Etienne J, Buchrieser C. (2008)

Multigenome analysis identifies a worldwide distributed epidemic Legionella pneumophila clone that emerged within a highly diverse species

Genome Res. 18(3):431-441. doi: 10.1101/gr.7229808
Europe PMC | doi