Sönmezer C, Kleinendorst R, Imanci D, Barzaghi G, Villacorta L, Schübeler D, Benes V, Molina N, Krebs AR. (2020)

Molecular co-occupancy identifies transcription factor binding cooperativity in vivo.

Mol Cell doi: 10.1016/j.molcel.2020.11.015
Europe PMC | doi

Ginno PA, Gaidatzis D, Feldmann A, Hoerner L, Imanci D, Burger L, Zilbermann F, Peters AHFM, Edenhofer F, Smallwood SA, Krebs AR, Schübeler D. (2020)

A genome-scale map of DNA methylation turnover identifies site-specific dependencies of DNMT and TET activity.

Nat Commun 11(1) doi: 10.1038/s41467-020-16354-x
Europe PMC | doi

Vonesch SC, Bredikhin D, Dobrev N, Villacorta L, Kleinendorst R, Cacace E, Flock J, Frank M, Jung F, Kornienko J, Mitosch K, Osuna-Lopez M, Zimmermann J, Goettig S, Hamprecht A, Kraeusslich H, Knop M, Typas A, Steinmetz LM, Benes V, Remans K, Krebs AR. (2020)

McQ – an open-source multiplexed SARS-CoV-2 quantification platform.

medRxiv preprint doi: 10.1101/2020.12.02.20242628
doi

Jüttner J, Szabo A, Gross-Scherf B, Morikawa RK, Rompani SB, Hantz P, Szikra T, Esposti F, Cowan CS, Bharioke A, Patino-Alvarez CP, Keles Ö, Kusnyerik A, Azoulay T, Hartl D, Schübeler D, Krebs AR, Lukats A, Hajdu RI, Nagy ZZ, Nemeth J, Wu RH, Wu KC, Fang XL, Xiang L, Goldblum D, Jin ZB, Scholl HPN, Hasler PW, Roska B, Krol J. (2019)

Targeting neuronal and glial cell types with synthetic promoter AAVs in mice, non-human primates and humans.

Nat. Neurosci. 22(8):1345-1356. doi: 10.1038/s41593-019-0431-2
Europe PMC | doi

Hartl D, Krebs AR, Jüttner J, Roska B, Schübeler D. (2017)

Cis-regulatory landscapes of four cell types of the retina.

Nucleic Acids Res 45(20):11607-11621. doi: 10.1093/nar/gkx923
Europe PMC | doi

Krebs AR, Imanci D, Hoerner L, Gaidatzis D, Burger L, Schübeler D. (2017)

Genome-wide Single-Molecule Footprinting Reveals High RNA Polymerase II Turnover at Paused Promoters.

Mol Cell 67(3):411-422.e4. doi: 10.1016/j.molcel.2017.06.027
Europe PMC | doi

Baubec T, Colombo DF, Wirbelauer C, Schmidt J, Burger L, Krebs AR, Akalin A, Schübeler D. (2015)

Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation

Nature 520(7546):243-278. doi: 10.1038/nature14176
Europe PMC | doi

Ye T, Ravens S, Krebs AR, Tora L. (2014)

Interpreting and visualizing ChIP-seq data with the seqMINER software.

Methods Mol Biol 1150:141-52. doi: 10.1007/978-1-4939-0512-6_8
Europe PMC | doi

Krebs AR, Dessus-Babus S, Burger L, Schübeler D. (2014)

High-throughput engineering of a mammalian genome reveals building principles of methylation states at CG rich regions

Elife 3 doi: 10.7554/eLife.04094
Europe PMC | doi

Krebs AR, Schübeler D. (2012)

Tracking the evolution of cancer methylomes

Nat Genet 44(11):1173-1174. doi: 10.1038/ng.2451
Europe PMC | doi

Krebs AR, Karmodiya K, Lindahl-Allen M, Struhl K, Tora L. (2011)

SAGA and ATAC Histone Acetyl Transferase Complexes Regulate Distinct Sets of Genes and ATAC Defines a Class of p300-Independent Enhancers

Mol Cell 44(3):410-423. doi: 10.1016/j.molcel.2011.08.037
Europe PMC | doi

Ye T, Krebs AR, Choukrallah MA, Keime C, Plewniak F, Davidson I, Tora L. (2011)

seqMINER: an integrated ChIP-seq data interpretation platform

Nucleic Acids Res 39(6) doi: 10.1093/nar/gkq1287
Europe PMC | doi

Anamika K, Krebs AR, Thompson J, Poch O, Devys D, Tora L. (2010)

Lessons from genome-wide studies: an integrated definition of the coactivator function of histone acetyl transferases

Epigenetics Chromatin 3(1) doi: 10.1186/1756-8935-3-18
Europe PMC | doi

Martianov I, Choukrallah MA, Krebs A, Ye T, Legras S, Rijkers E, Van Ijcken W, Jost B, Sassone-Corsi P, Davidson I. (2010)

Cell-specific occupancy of an extended repertoire of CREM and CREB binding loci in male germ cells

BMC Genomics 11 doi: 10.1186/1471-2164-11-530
Europe PMC | doi

Orpinell M, Fournier M, Riss A, Nagy Z, Krebs AR, Frontini M, Tora L. (2010)

The ATAC acetyl transferase complex controls mitotic progression by targeting non-histone substrates

EMBO J 29(14):2381-2394. doi: 10.1038/emboj.2010.125
Europe PMC | doi

Krebs AR, Demmers J, Karmodiya K, Chang NC, Chang AC, Tora L. (2010)

ATAC and Mediator coactivators form a stable complex and regulate a set of non-coding RNA genes

EMBO Rep 11(7):541-547. doi: 10.1038/embor.2010.75
Europe PMC | doi

Nagy Z, Riss A, Fujiyama S, Krebs A, Orpinell M, Jansen P, Cohen A, Stunnenberg HG, Kato S, Tora L. (2010)

The metazoan ATAC and SAGA coactivator HAT complexes regulate different sets of inducible target genes

Cell Mol Life Sci 67(4):611-628. doi: 10.1007/s00018-009-0199-8
Europe PMC | doi

Krebs A, Tora L. (2009)

Keys to Open Chromatin for Transcription Activation: FACT and Asf1

Mol Cell 34(4):397-399. doi: 10.1016/j.molcel.2009.05.004
Europe PMC | doi

Krebs A, Frontini M, Tora L. (2008)

GPAT: Retrieval of genomic annotation from large genomic position datasets

BMC Bioinformatics 9 doi: 10.1186/1471-2105-9-533
Europe PMC | doi