EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

Publications

Total: 6 publication(s)

2020

Ovchinnikova K, Kovalev V, Stuart L, Alexandrov T. (2020)

OffsampleAI: artificial intelligence approach to recognize off-sample mass spectrometry images.

BMC Bioinformatics 21(1) doi: 10.1186/s12859-020-3425-x
Europe PMC | doi


2019

Katja Ovchinnikova, Vitaly Kovalev, Lachlan Stuart, Theodore Alexandrov. (2019)

Recognizing off-sample mass spectrometry images with machine and deep learning.

bioRxiv 518977 doi: 10.1101/518977
doi

Theodore Alexandrov, Katja Ovchnnikova, Andrew Palmer, Vitaly Kovalev, Artem Tarasov, Lachlan Stuart, Renat Nigmetzianov, Dominik Fay, Key METASPACE Contributors. (2019)

METASPACE: A community-populated knowledge base of spatial metabolomes in health and disease.

bioRxiv 539478 doi: 10.1101/539478
doi


2018

C Silva AS, Palmer A, Kovalev V, Tarasov A, Alexandrov T, Martens L, Degroeve S. (2018)

Data-driven rescoring of metabolite annotations significantly improves sensitivity.

Anal. Chem. 90(19):11636-11642. doi: 10.1021/acs.analchem.8b03224
Europe PMC | doi

Silva ASC, Palmer A, Kovalev V, Tarasov A, Alexandrov T, Martens L, Degroeve S. (2018)

Data-driven restoring of metabolite annotations significantly improves sensitivity.

Anal. Chem. 90(19):11636-11642. doi: 10.1021/acs.analchem.8b03224
Europe PMC | doi


2017

Palmer A, Phapale P, Chernyavsky I, Lavigne R, Fay D, Tarasov A, Kovalev V, Fuchser J, Nikolenko S, Pineau C, Becker M, Alexandrov T. (2017)

FDR-controlled metabolite annotation for high-resolution imaging mass spectrometry.

Nat. Methods 14(1):57-60. doi: 10.1038/nmeth.4072
Europe PMC | doi