EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany
ORCID iD: 
0000-0002-2841-872X
Publications
Total: 11 publication(s)
2020
Molinaro A, Bel Lassen P, Henricsson M, Wu H, Adriouch S, Belda E, Chakaroun R, Nielsen T, Bergh PO, Rouault C, André S, Marquet F, Andreelli F, Salem JE, Assmann K, Bastard JP, Forslund S, Le Chatelier E, Falony G, Pons N, Prifti E, Quinquis B, Roume H, Vieira-Silva S, Hansen TH, Pedersen HK, Lewinter C, Sønderskov NB, MetaCardis Consortium, Køber L, Vestergaard H, Hansen T, Zucker JD, Galan P, Dumas ME, Raes J, Oppert JM, Letunic I, Nielsen J, Bork P, Ehrlich SD, Stumvoll M, Pedersen O, Aron-Wisneswky J, Clément K, Bäckhed F. (2020)
Imidazole propionate is increased in diabetes and associated with dietary patterns and altered microbial ecology.
Nat Commun 11(1) doi: 10.1038/s41467-020-19589-w
Europe PMC | doi
2019
Li Y, Kuhn M, Gavin AC, Bork P. (2019)
Identification of metabolites from tandem mass spectra with a machine learning approach utilizing structural features.
Bioinformatics 36(4):1213-1218. doi: 10.1093/bioinformatics/btz736
Europe PMC | doi
Romanov N, Kuhn M, Aebersold R, Ori A, Beck M, Bork P. (2019)
Disentangling genetic and environmental effects on the proteotypes of individuals.
Cell 177(5):1308-1318.e10. doi: 10.1016/j.cell.2019.03.015
Europe PMC | doi
2018
Tramontano M, Andrejev S, Pruteanu M, Klünemann M, Kuhn M, Galardini M, Jouhten P, Zelezniak A, Zeller G, Bork P, Typas A, Patil KR. (2018)
Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies.
Nat Microbiol 3(4) doi: 10.1038/s41564-018-0123-9
Europe PMC | doi
Maier L, Pruteanu M, Kuhn M, Zeller G, Telzerow A, Anderson EE, Brochado AR, Fernandez KC, Dose H, Mori H, Patil KR, Bork P, Typas A. (2018)
Extensive impact of non-antibiotic drugs on human gut bacteria.
Nature 555(7698) doi: 10.1038/nature25979
Europe PMC | doi
2017
Szklarczyk D, Morris JH, Cook H, Kuhn M, Wyder S, Simonovic M, Santos A, Doncheva NT, Roth A, Bork P, Jensen LJ, von Mering C. (2017)
The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.
Nucleic Acids Res. 45(D1):D362-D368. doi: 10.1093/nar/gkw937
Europe PMC | doi
2013
Iskar M, Zeller G, Blattmann P, Campillos M, Kuhn M, Kaminska KH, Runz H, Gavin AC, Pepperkok R, van Noort V, Bork P. (2013)
Characterization of drug-induced transcriptional modules: towards drug repositioning and functional understanding
Mol. Syst. Biol. 9:662. doi: 10.1038/msb.2013.20
Europe PMC | doi
Kuhn M, Al Banchaabouchi M, Campillos M, Jensen LJ, Gross C, Gavin AC, Bork P. (2013)
Systematic identification of proteins that elicit drug side effects
Mol. Syst. Biol. 9:663. doi: 10.1038/msb.2013.10
Europe PMC | doi
2008
Günther S, Kuhn M, Dunkel M, Campillos M, Senger C, Petsalaki E, Ahmed J, Urdiales EG, Gewiess A, Jensen LJ, Schneider R, Skoblo R, Russell RB, Bourne PE, Bork P, Preissner R. (2008)
SuperTarget and Matador: resources for exploring drug-target relationships
Nucleic Acids Res. 36(Database issue):D919-22. doi: 10.1093/nar/gkm862
Europe PMC | doi
Jensen LJ, Julien P, Kuhn M, von Mering C, Muller J, Doerks T, Bork P. (2008)
eggNOG: automated construction and annotation of orthologous groups of genes
Nucleic Acids Res. 36(Database issue):D250-4. doi: 10.1093/nar/gkm796
Europe PMC | doi
Kuhn M, von Mering C, Campillos M, Jensen LJ, Bork P. (2008)
STITCH: interaction networks of chemicals and proteins
Nucleic Acids Res. 36(Database issue):D684-8. doi: 10.1093/nar/gkm795
Europe PMC | doi