Li Y, Kuhn M, Gavin AC, Bork P. (2019)

Identification of metabolites from tandem mass spectra with a machine learning approach utilizing structural features.

Bioinformatics 36(4) doi: 10.1093/bioinformatics/btz736
Europe PMC | doi

Romanov N, Kuhn M, Aebersold R, Ori A, Beck M, Bork P. (2019)

Disentangling genetic and environmental effects on the proteotypes of individuals.

Cell 177(5):1308-1318.e10. doi: 10.1016/j.cell.2019.03.015
Europe PMC | doi

Tramontano M, Andrejev S, Pruteanu M, Klünemann M, Kuhn M, Galardini M, Jouhten P, Zelezniak A, Zeller G, Bork P, Typas A, Patil KR. (2018)

Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies.

Nat Microbiol 3(4) doi: 10.1038/s41564-018-0123-9
Europe PMC | doi

Maier L, Pruteanu M, Kuhn M, Zeller G, Telzerow A, Anderson EE, Brochado AR, Fernandez KC, Dose H, Mori H, Patil KR, Bork P, Typas A. (2018)

Extensive impact of non-antibiotic drugs on human gut bacteria.

Nature 555(7698) doi: 10.1038/nature25979
Europe PMC | doi

Szklarczyk D, Morris JH, Cook H, Kuhn M, Wyder S, Simonovic M, Santos A, Doncheva NT, Roth A, Bork P, Jensen LJ, von Mering C. (2017)

The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.

Nucleic Acids Res. 45(D1):D362-D368. doi: 10.1093/nar/gkw937
Europe PMC | doi

Iskar M, Zeller G, Blattmann P, Campillos M, Kuhn M, Kaminska KH, Runz H, Gavin AC, Pepperkok R, van Noort V, Bork P. (2013)

Characterization of drug-induced transcriptional modules: towards drug repositioning and functional understanding

Mol. Syst. Biol. 9:662. doi: 10.1038/msb.2013.20
Europe PMC | doi

Kuhn M, Al Banchaabouchi M, Campillos M, Jensen LJ, Gross C, Gavin AC, Bork P. (2013)

Systematic identification of proteins that elicit drug side effects

Mol. Syst. Biol. 9:663. doi: 10.1038/msb.2013.10
Europe PMC | doi

Günther S, Kuhn M, Dunkel M, Campillos M, Senger C, Petsalaki E, Ahmed J, Urdiales EG, Gewiess A, Jensen LJ, Schneider R, Skoblo R, Russell RB, Bourne PE, Bork P, Preissner R. (2008)

SuperTarget and Matador: resources for exploring drug-target relationships

Nucleic Acids Res. 36(Database issue):D919-22. doi: 10.1093/nar/gkm862
Europe PMC | doi

Jensen LJ, Julien P, Kuhn M, von Mering C, Muller J, Doerks T, Bork P. (2008)

eggNOG: automated construction and annotation of orthologous groups of genes

Nucleic Acids Res. 36(Database issue):D250-4. doi: 10.1093/nar/gkm796
Europe PMC | doi

Kuhn M, von Mering C, Campillos M, Jensen LJ, Bork P. (2008)

STITCH: interaction networks of chemicals and proteins

Nucleic Acids Res. 36(Database issue):D684-8. doi: 10.1093/nar/gkm795
Europe PMC | doi