EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

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Total: 15 publication(s)


Mende DR, Letunic I, Huerta-Cepas J, Li SS, Forslund K, Sunagawa S, Bork P. (2016)

proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes.

Nucleic Acids Res. 45(D1):D529-D534. doi: 10.1093/nar/gkw989
Europe PMC | doi

Li SS, Zhu A, Benes V, Costea PI, Hercog R, Hildebrand F, Huerta-Cepas J, Nieuwdorp M, Salojärvi J, Voigt AY, Zeller G, Sunagawa S, de Vos WM, Bork P. (2016)

Durable coexistence of donor and recipient strains after fecal microbiota transplantation.

Science 352(6285):586-589. doi: 10.1126/science.aad8852
Europe PMC | doi

Kultima JR, Coelho LP, Forslund K, Huerta-Cepas J, Li SS, Driessen M, Voigt AY, Zeller G, Sunagawa S, Bork P. (2016)

MOCAT2: a metagenomic assembly, annotation and profiling framework.

Bioinformatics doi: 10.1093/bioinformatics/btw183
Europe PMC | doi


Voigt AY, Costea PI, Kultima JR, Li SS, Zeller G, Sunagawa S, Bork P. (2015)

Temporal and technical variability of human gut metagenomes.

Genome Biol. 16(1) doi: 10.1186/s13059-015-0639-8
Europe PMC | doi


Schramm SJ, Jayaswal V, Goel A, Li SS, Yang YH, Mann GJ, Wilkins MR. (2013)

Molecular interaction networks for the analysis of human disease: utility, limitations, and considerations.

Proteomics 13(23-24):3393-3405. doi: 10.1002/pmic.201200570
Europe PMC | doi

Schramm SJ, Li SS, Jayaswal V, Fung DC, Campain AE, Pang CN, Scolyer RA, Yang YH, Mann GJ, Wilkins MR. (2013)

Disturbed protein-protein interaction networks in metastatic melanoma are associated with worse prognosis and increased functional mutation burden.

Pigment Cell Melanoma Res 26(5):708-722. doi: 10.1111/pcmr.12126
Europe PMC | doi


Pang CN, Goel A, Li SS, Wilkins MR. (2012)

A multidimensional matrix for systems biology research and its application to interaction networks.

J. Proteome Res. 11(11):5204-5220. doi: 10.1021/pr300405y
Europe PMC | doi

Fung DC, Li SS, Goel A, Hong SH, Wilkins MR. (2012)

Visualization of the interactome: what are we looking at?

Proteomics 12(10):1669-1686. doi: 10.1002/pmic.201100454
Europe PMC | doi


Ayer A, Fellermeier S, Fife C, Li SS, Smits G, Meyer AJ, Dawes IW, Perrone GG. (2011)

A genome-wide screen in yeast identifies specific oxidative stress genes required for the maintenance of sub-cellular redox homeostasis.

PLoS ONE 7(9) doi: 10.1371/journal.pone.0044278
Europe PMC | doi

Chong HS, Campbell L, Padula MP, Hill C, Harry E, Li SS, Wilkins MR, Herbert B, Carter D. (2011)

Time-course proteome analysis reveals the dynamic response of Cryptococcus gattii cells to fluconazole.

PLoS ONE 7(8) doi: 10.1371/journal.pone.0042835
Europe PMC | doi

Li SS, Xu K, Wilkins MR. (2011)

Visualization and analysis of the complexome network of Saccharomyces cerevisiae.

J. Proteome Res. 10(10):4744-4756. doi: 10.1021/pr200548c
Europe PMC | doi

Goel A, Li SS, Wilkins MR. (2011)

Four-dimensional visualisation and analysis of protein-protein interaction networks.

Proteomics 11(13):2672-2682. doi: 10.1002/pmic.201000546
Europe PMC | doi


Deshpande NP, Kaakoush NO, Mitchell H, Janitz K, Raftery MJ, Li SS, Wilkins MR. (2010)

Sequencing and validation of the genome of a Campylobacter concisus reveals intra-species diversity.

PLoS ONE 6(7) doi: 10.1371/journal.pone.0022170
Europe PMC | doi

Ma L, Pang CN, Li SS, Wilkins MR. (2010)

Proteins deleterious on overexpression are associated with high intrinsic disorder, specific interaction domains, and low abundance.

J. Proteome Res. 9(3):1218-1225. doi: 10.1021/pr900693e
Europe PMC | doi


Widjaja YY, Pang CN, Li SS, Wilkins MR, Lambert TD. (2009)

The Interactorium: visualising proteins, complexes and interaction networks in a virtual 3-D cell.

Proteomics 9(23):5309-5315. doi: 10.1002/pmic.200900260
Europe PMC | doi