EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

ORCID iD: iD icon0000-0001-8587-4177

Publications

Total: 10 publication(s)

2020

Logares R, Deutschmann IM, Junger PC, Giner CR, Krabberød AK, Schmidt TSB, Rubinat-Ripoll L, Mestre M, Salazar G, Ruiz-González C, Sebastián M, de Vargas C, Acinas SG, Duarte CM, Gasol JM, Massana R. (2020)

Disentangling the mechanisms shaping the surface ocean microbiota.

Microbiome 8(1) doi: 10.1186/s40168-020-00827-8
Europe PMC | doi

Maistrenko OM, Mende DR, Luetge M, Hildebrand F, Schmidt TSB, Li SS, Rodrigues JFM, von Mering C, Pedro Coelho L, Huerta-Cepas J, Sunagawa S, Bork P. (2020)

Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity.

ISME J 14(5):1247-1259. doi: 10.1038/s41396-020-0600-z
Europe PMC | doi

Mende DR, Letunic I, Maistrenko OM, Schmidt TSB, Milanese A, Paoli L, Hernández-Plaza A, Orakov AN, Forslund SK, Sunagawa S, Zeller G, Huerta-Cepas J, Coelho LP, Bork P. (2020)

proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes.

Nucleic Acids Res. 48(D1):D621-D625. doi: 10.1093/nar/gkz1002
Europe PMC | doi


2019

Spalinger MR, Schmidt TS, Schwarzfischer M, Hering L, Atrott K, Lang S, Gottier C, Geirnaert A, Lacroix C, Dai X, Rawlings DJ, Chan AC, von Mering C, Rogler G, Scharl M. (2019)

Protein tyrosine phosphatase non-receptor type 22 modulates colitis in a microbiota-dependent manner.

J. Clin. Invest. 129(6):2527-2541. doi: 10.1172/JCI123263
Europe PMC | doi

Milanese A, Mende DR, Paoli L, Salazar G, Ruscheweyh HJ, Cuenca M, Hingamp P, Alves R, Costea PI, Coelho LP, Schmidt TSB, Almeida A, Mitchell AL, Finn RD, Huerta-Cepas J, Bork P, Zeller G, Sunagawa S. (2019)

Microbial abundance, activity and population genomic profiling with mOTUs2.

Nat Commun 10(1) doi: 10.1038/s41467-019-08844-4
Europe PMC | doi

Schmidt TSB, Hayward MR, Coelho LP, Li SS, Costea PI, Voigt AY, Wirbel J, Maistrenko OM, Alves RJ, Bergsten E, de Beaufort C, Sobhani I, Heintz-Buschart A, Sunagawa S, Zeller G, Wilmes P, Bork P. (2019)

Extensive transmission of microbes along the gastrointestinal tract.

Elife 8 doi: 10.7554/eLife.42693
Europe PMC | doi


2018

Tackmann J, Arora N, Schmidt TSB, Rodrigues JFM, von Mering C. (2018)

Ecologically informed microbial biomarkers and accurate classification of mixed and unmixed samples in an extensive cross-study of human body sites.

Microbiome 6(1) doi: 10.1186/s40168-018-0565-6
Europe PMC | doi

Coelho LP, Kultima JR, Costea PI, Fournier C, Pan Y, Czarnecki-Maulden G, Hayward MR, Forslund SK, Schmidt TSB, Descombes P, Jackson JR, Li Q, Bork P. (2018)

Similarity of the dog and human gut microbiomes in gene content and response to diet.

Microbiome 6(1) doi: 10.1186/s40168-018-0450-3
Europe PMC | doi

Schmidt TSB, Raes J, Bork P. (2018)

The Human Gut Microbiome: From Association to Modulation.

Cell 172(6):1198-1215. doi: 10.1016/j.cell.2018.02.044
Europe PMC | doi


2017

Schmidt TS, Matias Rodrigues JF, von Mering C. (2017)

A family of interaction-adjusted indices of community similarity.

ISME J 11(3):791-807. doi: 10.1038/ismej.2016.139
Europe PMC | doi