EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

ORCID iD: iD icon0000-0001-6021-1246

Publications

Total: 11 publication(s)

2019

Zimmermann-Kogadeeva M, Zimmermann M, Goodman AL. (2019)

Insights from pharmacokinetic models of host-microbiome drug metabolism.

Gut Microbes 11(3):1-10. doi: 10.1080/19490976.2019.1667724
Europe PMC | doi

Zimmermann M, Zimmermann-Kogadeeva M, Wegmann R, Goodman AL. (2019)

Mapping human microbiome drug metabolism by gut bacteria and their genes.

Nature 570(7762) doi: 10.1038/s41586-019-1291-3
Europe PMC | doi

Zimmermann M, Zimmermann-Kogadeeva M, Wegmann R, Goodman AL. (2019)

Separating host and microbiome contributions to drug pharmacokinetics and toxicity.

Science 363(6427) doi: 10.1126/science.aat9931
Europe PMC | doi


2018

Schofield WB, Zimmermann-Kogadeeva M, Zimmermann M, Barry NA, Goodman AL. (2018)

The Stringent Response Determines the Ability of a Commensal Bacterium to Survive Starvation and to Persist in the Gut.

Cell Host Microbe 24(1):120-132.e6. doi: 10.1016/j.chom.2018.06.002
Europe PMC | doi


2017

Zimmermann M, Kogadeeva M, Gengenbacher M, McEwen G, Mollenkopf HJ, Zamboni N, Kaufmann SHE, Sauer U. (2017)

Integration of Metabolomics and Transcriptomics Reveals a Complex Diet of Mycobacterium tuberculosis during Early Macrophage Infection.

mSystems 2(4) doi: 10.1128/mSystems.00057-17
Europe PMC | doi


2016

Geiger R, Rieckmann JC, Wolf T, Basso C, Feng YH, Fuhrer T, Kogadeeva M, Picotti P, Meissner F, Mann M, Zamboni N, Sallusto F, Lanzavecchia A. (2016)

L-arginine modulates T cell metabolism and enhances survival and anti-tumor activity.

Cell 167(3):829-842.e13. doi: 10.1016/j.cell.2016.09.031
Europe PMC | doi

De Smet J, Zimmermann M, Kogadeeva M, Ceyssens PJ, Vermaelen W, Blasdel B, Bin Jang H, Sauer U, Lavigne R. (2016)

High coverage metabolomics analysis reveals phage-specific alterations to Pseudomonas aeruginosa physiology during infection.

ISME J 10(8):1823-35. doi: 10.1038/ismej.2016.3
Europe PMC | doi

Kogadeeva M, Zamboni N. (2016)

SUMOFLUX: A Generalized Method for Targeted C-13 Metabolic Flux Ratio Analysis.

PLoS Comput. Biol. 12(9) doi: 10.1371/journal.pcbi.1005109
Europe PMC | doi

Chevallereau A, Blasdel BG, De Smet J, Monot M, Zimmermann M, Kogadeeva M, Sauer U, Jorth P, Whiteley M, Debarbieux L, Lavigne R. (2016)

Next-generation "-omics" approaches reveal a massive alteration of host RNA metabolism during bacteriophage infection of Pseudomonas aeruginosa.

PLoS Genet. 12(7) doi: 10.1371/journal.pgen.1006134
Europe PMC | doi


2015

Schubert OT, Ludwig C, Kogadeeva M, Zimmermann M, Rosenberger G, Gengenbacher M, Gillet LC, Collins BC, Röst HL, Kaufmann SH, Sauer U, Aebersold R. (2015)

Absolute Proteome Composition and Dynamics during Dormancy and Resuscitation of Mycobacterium tuberculosis.

Cell Host Microbe 18(1):96-108. doi: 10.1016/j.chom.2015.06.001
Europe PMC | doi


2012

Oliveira AP, Ludwig C, Picotti P, Kogadeeva M, Aebersold R, Sauer U. (2012)

Regulation of yeast central metabolism by enzyme phosphorylation.

Mol. Syst. Biol. 8 doi: 10.1038/msb.2012.55
Europe PMC | doi