Databases

Chaetomium thermophilum genome resourceThe first complete genome of a true thermophilic eukaryote
Companion websiteCompanion website for TaraOcean's paper: Sunagawa, Coelho, Chaffron, et al. (2015) Structure and function of the global ocean microbiome, Science, doi:10.1126/science.1261359. List of available yeast strains expressing a tagged-protein fusion.
Suppl. to variablecomplexesProtein complex stoichiometry

Gene Analysis

BLAST2GENEGene analysis in genomic regions

Gene Expression

PTMcodeA resource for functional associations of post-translational modifications within and between proteins

Phylogeny

eggNOGEvolutionary genealogy of genes: Non-supervised Orthologous Groups
ETE 3Reconstruction, Analysis, and Visualization of Phylogenomic Data
iTOLInteractive Tree Of Life - an online tool for the display and manipulation of phylogenetic trees

Protein Function Analysis

MATADORManually Annotated Targets and Drugs Online Resource
SMARTSimple Modular Architecture Research Tool
STITCHA resource to explore known and predicted interactions of chemicals and proteins
STRINGSearch Tool for the Retrieval of Interacting Genes/Proteins

Structural Analysis

PolyPhenPrediction of functional effect of human nsSNPs

Visualisation

iPathInteractive Pathways Explorer (iPath) is a web-based tool for the visualization, analysis and customization of various pathway maps