EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany
Publications
Total: 6 publication(s)
2021
Mészáros B, Sámano-Sánchez H, Alvarado-Valverde J, Čalyševa J, Martínez-Pérez E, Alves R, Shields DC, Kumar M, Rippmann F, Chemes LB, Gibson TJ. (2021)
Short linear motif candidates in the cell entry system used by SARS-CoV-2 and their potential therapeutic implications.
Sci Signal 14(665) doi: 10.1126/scisignal.abd0334
Europe PMC | doi
2020
Molinaro A, Bel Lassen P, Henricsson M, Wu H, Adriouch S, Belda E, Chakaroun R, Nielsen T, Bergh PO, Rouault C, André S, Marquet F, Andreelli F, Salem JE, Assmann K, Bastard JP, Forslund S, Le Chatelier E, Falony G, Pons N, Prifti E, Quinquis B, Roume H, Vieira-Silva S, Hansen TH, Pedersen HK, Lewinter C, Sønderskov NB, MetaCardis Consortium, Køber L, Vestergaard H, Hansen T, Zucker JD, Galan P, Dumas ME, Raes J, Oppert JM, Letunic I, Nielsen J, Bork P, Ehrlich SD, Stumvoll M, Pedersen O, Aron-Wisneswky J, Clément K, Bäckhed F. (2020)
Imidazole propionate is increased in diabetes and associated with dietary patterns and altered microbial ecology.
Nat Commun 11(1) doi: 10.1038/s41467-020-19589-w
Europe PMC | doi
2019
Coelho LP, Alves R, Monteiro P, Huerta-Cepas J, Freitas AT, Bork P. (2019)
NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language.
Microbiome 7(1) doi: 10.1186/s40168-019-0684-8
Europe PMC | doi
Milanese A, Mende DR, Paoli L, Salazar G, Ruscheweyh HJ, Cuenca M, Hingamp P, Alves R, Costea PI, Coelho LP, Schmidt TSB, Almeida A, Mitchell AL, Finn RD, Huerta-Cepas J, Bork P, Zeller G, Sunagawa S. (2019)
Microbial abundance, activity and population genomic profiling with mOTUs2.
Nat Commun 10(1) doi: 10.1038/s41467-019-08844-4
Europe PMC | doi
Schmidt TSB, Hayward MR, Coelho LP, Li SS, Costea PI, Voigt AY, Wirbel J, Maistrenko OM, Alves RJ, Bergsten E, de Beaufort C, Sobhani I, Heintz-Buschart A, Sunagawa S, Zeller G, Wilmes P, Bork P. (2019)
Extensive transmission of microbes along the gastrointestinal tract.
Elife 8 doi: 10.7554/eLife.42693
Europe PMC | doi
Hildebrand F, Moitinho-Silva L, Blasche S, Jahn MTT, Gossmann TI, Huerta Cepas J, Hercog R, Luetge M, Bahram M, Pryszlak A, Alves RJ, Waszak SM, Zhu A, Ye L, Costea PI, Belzer C, Aalvink S, Sunagawa S, Forslund SK, Merten C, Hentschel U, Benes V, Patil KR, Bork P. (2019)
Antibiotics-induced monodominance of a novel gut bacterial order.
Gut 68(10):1781-1790. doi: 10.1136/gutjnl-2018-317715
Europe PMC | doi