ALMF in-house workshop

23 - 27 March 2015

If you want to participate, please register by email to almf(at)embl.

Topics: Imaris (Bitplane), Columbus + Spotfire (PerkinElmer), CellProfiler (Open Source), Arivis (Arivis Vision), Huygens (SVI)

23 March
Computer training lab (ATC)
9:30 - 12:30 Michael Mahlert (Bitplane): Imaris - 4D analysis and visualization
12:30 - 13:30 Lunch break
13:30 - 17:30

Michael Mahlert (Bitplane): Imaris - 4D analysis and visualization


24 March
Computer training lab (ATC)
9:30 - 12:30 Christian Schueller (PerkinElmer): Columbus
12:30 - 13:30 Lunch break
13:30 - 17:30 Christian Schueller (PerkinElmer): Spotfire

25 March
Computer training lab (ATC)
9:30 - 12:30 Christian Tischer: Introduction to Cell Profiler (tool for batch image analysis)
12:30 - 13:30 Lunch break
13:30 - 17:30 Christian Tischer: Introduction to Cell Profiler (tool for batch image analysis)

26 March
Computer training lab (ATC)
9:30 - 12:30 Matthias Rust (Arivis): Arivis big data 4D Visualization and Analysis
12:30 - 13:30 Lunch break
13:30 - 17:30 Matthias Rust (Arivis): Arivis big data 4D Visualization and Analysis

27 March
Computer training lab (ATC)
9:30 - 10:15 Daniel Sevilla Sanchez (SVI): Presentation How to get the best out of your microscopic (super-resolution) images - Huygens image restoration
10:25 - 10:50 Daniel Sevilla Sanchez (SVI):
Organize and search images with Huygens Titan (hands-on)
10:50 - 12:10 Daniel Sevilla Sanchez (SVI):Huygens deconvolution presentation and (hands-on)
12:10 - 13:30 Lunch break
13:30 - 17:00 Daniel Sevilla Sanchez (SVI): Twin Slicer (with hands-on), PSF Distiller, Chromatic shift and cross talk correction, image stabilization, 3D Stitching, MovieMaker, Colocalization Analyzer