Publications

Total: 192 publication(s)

2021

Benito-Gutiérrez È, Gattoni G, Stemmer M, Rohr SD, Schuhmacher LN, Tang J, Marconi A, Jékely G, Arendt D. (2021)

The dorsoanterior brain of adult amphioxus shares similarities in expression profile and neuronal composition with the vertebrate telencephalon.

BMC Biol 19(1) doi: 10.1186/s12915-021-01045-w
Europe PMC | doi

Boehm U, Nelson G, Brown CM, Bagley S, Bajcsy P, Bischof J, Dauphin A, Dobbie IM, Eriksson JE, Faklaris O, Fernandez-Rodriguez J, Ferrand A, Gelman L, Gheisari A, Hartmann H, Kukat C, Laude A, Mitkovski M, Munck S, North AJ, Rasse TM, Resch-Genger U, Schuetz LC, Seitz A, Strambio-De-Castillia C, Swedlow JR, Nitschke R. (2021)

QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy.

Nat Methods doi: 10.1038/s41592-021-01162-y
Europe PMC | doi

Sarkans U, Chiu W, Collinson L, Darrow MC, Ellenberg J, Grunwald D, Hériché JK, Iudin A, Martins GG, Meehan T, Narayan K, Patwardhan A, Russell MRG, Saibil HR, Strambio-De-Castillia C, Swedlow JR, Tischer C, Uhlmann V, Verkade P, Barlow M, Bayraktar O, Birney E, Catavitello C, Cawthorne C, Wagner-Conrad S, Duke E, Paul-Gilloteaux P, Gustin E, Harkiolaki M, Kankaanpää P, Lemberger T, McEntyre J, Moore J, Nicholls AW, Onami S, Parkinson H, Parsons M, Romanchikova M, Sofroniew N, Swoger J, Utz N, Voortman LM, Wong F, Zhang P, Kleywegt GJ, Brazma A. (2021)

REMBI: recommended metadata for biological images-enabling reuse of microscopy data in biology.

Nat Methods doi: 10.1038/s41592-021-01166-8
Europe PMC | doi

Fuqua T, Jordan J, Halavatyi A, Tischer C, Richter K, Crocker J. (2021)

An open-source semi-automated robotics pipeline for embryo immunohistochemistry.

Sci Rep 11(1) doi: 10.1038/s41598-021-89676-5
Europe PMC | doi

Bose M, Mahamid J, Ephrussi A. (2021)

Liquid-to-solid phase transition of oskar RNP granules is essential for their function in the Drosophila germline.

bioRxivorg doi: 10.1101/2021.03.31.437848
doi

Gáspár I, Phea LJ, Ephrussi A. (2021)

Egalitarian feeds forward to Staufen to inhibit Dynein during mRNP transport.

bioRxivorg doi: 2021.04.24.441269
doi

Jung J, Khan MM, Landry J, Halavatyi A, Machado P, Reiss M, Pepperkok R. (2021)

A high throughput SEC23 functional interaction screen reveals a role for focal adhesion and extracellular matrix signalling in the regulation of COPII subunit SEC23A

bioRxivorg doi: 10.1101/2021.03.16.435679
doi

Ronchi P, Machado P, D’Imprima E, Mizzon G, Best BT, Cassella L, Schnorrenberg S, Montero MG, Jechlinger M, Ephrussi A, Leptin M, Mahamid J, Schwab Y. (2021)

Fluorescence-based 3D targeting of FIB-SEM acquisition of small volumes in large samples.

bioRxivorg doi: 10.1101/2021.01.18.427072
doi

Schuetz L, Terjung S. (2021)

QUAREP-LiMi: a community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy.

arXiv.org doi: arXiv:2101.09153
doi


2020

Rappez L, Rakhlin A, Rigopoulos A, Nikolenko S, Alexandrov T. (2020)

DeepCycle reconstructs a cyclic cell cycle trajectory from unsegmented cell images using convolutional neural networks.

Mol Syst Biol 16(10) doi: 10.15252/msb.20209474
Europe PMC | doi

Ikmi A, Steenbergen PJ, Anzo M, McMullen MR, Stokkermans A, Ellington LR, Gibson MC. (2020)

Feeding-dependent tentacle development in the sea anemone Nematostella vectensis.

Nat Commun 11(1) doi: 10.1038/s41467-020-18133-0
Europe PMC | doi

Alladin A, Chaible L, Garcia Del Valle L, Sabine R, Loeschinger M, Wachsmuth M, Hériché JK, Tischer C, Jechlinger M. (2020)

Tracking cells in epithelial acini by light sheet microscopy reveals proximity effects in breast cancer initiation.

Elife 9 doi: 10.7554/eLife.54066
Europe PMC | doi

Paci G, Zheng T, Caria J, Zilman A, Lemke EA. (2020)

Molecular determinants of large cargo transport into the nucleus.

Elife 9 doi: 10.7554/eLife.55963
Europe PMC | doi

Bittner T, Wittwer C, Hauke S, Wohlwend D, Mundinger S, Dutta AK, Bezold D, Dürr T, Friedrich T, Schultz C, Jessen HJ. (2020)

Photolysis of caged inositol Pyrophosphate InsP 8 directly modulates intracellular Ca 2+ oscillations and controls C2AB domain localization.

J Am Chem Soc 142(24):10606-10611. doi: 10.1021/jacs.0c01697
Europe PMC | doi

Mathew R, Rios-Barrera LD, Machado P, Schwab Y, Leptin M. (2020)

Transcytosis via the late endocytic pathway as a cell morphogenetic mechanism.

EMBO J. 39(16) doi: 10.15252/embj.2020105332
Europe PMC | doi

Krueger D, Pallares Cartes C, Makaske T, De Renzis S. (2020)

βH-spectrin is required for ratcheting apical pulsatile constrictions during tissue invagination.

EMBO Rep. 21(8) doi: 10.15252/embr.201949858
Europe PMC | doi

Bunina D, Abazova N, Diaz N, Noh KM, Krijgsveld J, Zaugg JB. (2020)

Genomic Rewiring of SOX2 Chromatin Interaction Network during Differentiation of ESCs to Postmitotic Neurons.

Cell Syst 10(6):480-494.e8. doi: 10.1016/j.cels.2020.05.003
Europe PMC | doi

Shen Y, Wang X, Lu J, Salfenmoser M, Wirsik NM, Schleussner N, Imle A, Freire Valls A, Radhakrishnan P, Liang J, Wang G, Muley T, Schneider M, Ruiz de Almodovar C, Diz-Muñoz A, Schmidt T. (2020)

Reduction of liver metastasis stiffness improves response to bevacizumab in metastatic colorectal cancer.

Cancer Cell 37(6):800-817.e7. doi: 10.1016/j.ccell.2020.05.005
Europe PMC | doi

Selkrig J, Li N, Hausmann A, Mangan MSJ, Zietek M, Mateus A, Bobonis J, Sueki A, Imamura H, El Debs B, Sigismondo G, Florea BI, Overkleeft HS, Kopitar-Jerala N, Turk B, Beltrao P, Savitski MM, Latz E, Hardt WD, Krijgsveld J, Typas A. (2020)

Spatiotemporal proteomics uncovers cathepsin-dependent macrophage cell death during Salmonella infection.

Nat Microbiol 5(9):1119-1133. doi: 10.1038/s41564-020-0736-7
Europe PMC | doi

Hartmann J, Wong M, Gallo E, Gilmour D. (2020)

An image-based data-driven analysis of cellular architecture in a developing tissue.

Elife 9 doi: 10.7554/eLife.55913
Europe PMC | doi

Kumar V, Agrawal R, Pandey A, Kopf S, Hoeffgen M, Kaymak S, Bandapalli OR, Gorbunova V, Seluanov A, Mall MA, Herzig S, Nawroth PP. (2020)

Compromised DNA repair is responsible for diabetes-associated fibrosis.

EMBO J 39(11) doi: 10.15252/embj.2019103477
Europe PMC | doi

Drainas AP, Lambuta RA, Ivanova I, Serçin Ö, Sarropoulos I, Smith ML, Efthymiopoulos T, Raeder B, Stütz AM, Waszak SM, Mardin BR, Korbel JO. (2020)

Genome-wide screens implicate loss of cullin ring ligase 3 in persistent proliferation and genome instability in TP53-deficient cells.

Cell Rep 31(1) doi: 10.1016/j.celrep.2020.03.029
Europe PMC | doi

Gehre M, Bunina D, Sidoli S, Lübke MJ, Diaz N, Trovato M, Garcia BA, Zaugg JB, Noh KM. (2020)

Lysine 4 of histone H3.3 is required for embryonic stem cell differentiation, histone enrichment at regulatory regions and transcription accuracy.

Nat. Genet. 52(3):273-282. doi: 10.1038/s41588-020-0586-5
Europe PMC | doi

Costa AR, Sousa SC, Pinto-Costa R, Mateus JC, Lopes CD, Costa AC, Rosa D, Machado D, Pajuelo L, Wang X, Zhou FQ, Pereira AJ, Sampaio P, Rubinstein BY, Mendes Pinto I, Lampe M, Aguiar P, Sousa MM. (2020)

The membrane periodic skeleton is an actomyosin network that regulates axonal diameter and conduction.

Elife 9 doi: 10.7554/eLife.55471
Europe PMC | doi

Wong M, Newton LR, Hartmann J, Hennrich ML, Wachsmuth M, Ronchi P, Guzmán-Herrera A, Schwab Y, Gavin AC, Gilmour D. (2020)

Dynamic buffering of extracellular chemokine by a dedicated scavenger pathway enables robust adaptation during directed tissue migration.

Dev. Cell 52(4):492-508.e10. doi: 10.1016/j.devcel.2020.01.013
Europe PMC | doi

Wesolowska N, Avilov I, Machado P, Geiss C, Kondo H, Mori M, Lenart P. (2020)

Actin assembly ruptures the nuclear envelope by prying the lamina away from nuclear pores and nuclear membranes in starfish oocytes.

Elife 9 doi: 10.7554/eLife.49774
Europe PMC | doi

Best BT, Leptin M. (2020)

Multiple requirements for Rab GTPases in the development of Drosophila tracheal dorsal branches and terminal cells.

G3 (Bethesda) 10(3):1099-1112. doi: 10.1534/g3.119.400967
Europe PMC | doi

Baccin C, Al-Sabah J, Velten L, Helbling PM, Grünschläger F, Hernández-Malmierca P, Nombela-Arrieta C, Steinmetz LM, Trumpp A, Haas S. (2020)

Combined single-cell and spatial transcriptomics reveal the molecular, cellular and spatial bone marrow niche organization.

Nat. Cell Biol. 22(1):38-48. doi: 10.1038/s41556-019-0439-6
Europe PMC | doi

Toro-Nahuelpan M, Zagoriy I, Senger F, Blanchoin L, Théry M, Mahamid J. (2020)

Tailoring cryo-electron microscopy grids by photo-micropatterning for in-cell structural studies.

Nat. Methods 17(1):50-54. doi: 10.1038/s41592-019-0630-5
Europe PMC | doi


2019

Serçin Ö, Reither S, Roidos P, Ballin N, Palikyras S, Baginska A, Rein K, Llamazares M, Halavatyi A, Winter H, Muley T, Jurkowska RZ, Abdollahi A, Zenke FT, Neumann B, Mardin BR. (2019)

A solid-phase transfection platform for arrayed CRISPR screens.

Mol. Syst. Biol. 15(12) doi: 10.15252/msb.20198983
Europe PMC | doi

Hardwick SA, Joglekar A, Flicek P, Frankish A, Tilgner HU. (2019)

Getting the entire message: progress in isoform sequencing.

Front Genet 10 doi: 10.3389/fgene.2019.00709
Europe PMC | doi

Ryan AQ, Chan CJ, Graner F, Hiiragi T. (2019)

Lumen expansion facilitates epiblast-primitive endoderm fate specification during mouse blastocyst formation.

Dev. Cell 51(6):684-697.e4. doi: 10.1016/j.devcel.2019.10.011
Europe PMC | doi

Querques I, Mades A, Zuliani C, Miskey C, Alb M, Grueso E, Machwirth M, Rausch T, Einsele H, Ivics Z, Hudecek M, Barabas O. (2019)

A highly soluble Sleeping Beauty transposase improves control of gene insertion.

Nat. Biotechnol. 37(12):1502-1512. doi: 10.1038/s41587-019-0291-z
Europe PMC | doi

Polikarpov M, Bourenkov G, Snigireva I, Snigirev A, Zimmermann S, Csanko K, Brockhauser S, Schneider TR. (2019)

Visualization of protein crystals by high-energy phase-contrast X-ray imaging.

Acta Crystallogr D Struct Biol 75(Pt 11):947-958. doi: 10.1107/S2059798319011379
Europe PMC | doi

Thevathasan JV, Kahnwald M, Cieśliński K, Hoess P, Peneti SK, Reitberger M, Heid D, Kasuba KC, Hoerner SJ, Li Y, Wu YL, Mund M, Matti U, Pereira PM, Henriques R, Kueblbeck M, Nijmeijer B, Ellenberg J, Sabinina VJ, Ries J. (2019)

Nuclear pores as versatile reference standards for quantitative superresolution microscopy.

Nat. Methods 16(10):1045-1053. doi: 10.1038/s41592-019-0574-9
Europe PMC | doi

Ochs F, Karemore G, Miron E, Brown J, Sedlackova H, Rask MB, Lampe M, Buckle V, Schermelleh L, Lukas J, Lukas C. (2019)

Stabilization of chromatin topology safeguards genome integrity.

Nature 574(7779):571-574. doi: 10.1038/s41586-019-1659-4
Europe PMC | doi

Vopalensky P, Tosches MA, Achim K, Handberg-Thorsager M, Arendt D. (2019)

From spiral cleavage to bilateral symmetry: the developmental cell lineage of the annelid brain.

BMC Biol. 17(1) doi: 10.1186/s12915-019-0705-x
Europe PMC | doi

Hampoelz B, Schwarz A, Ronchi P, Bragulat-Teixidor H, Tischer C, Gaspar I, Ephrussi A, Schwab Y, Beck M. (2019)

Nuclear pores assemble from Nucleoporin condensates during oogenesis.

Cell 179(3):671-686.e17. doi: 10.1016/j.cell.2019.09.022
Europe PMC | doi

Spahn C, Hurter F, Glaesmann M, Karathanasis C, Lampe M, Heilemann M. (2019)

Protein-specific, multi-color and 3D STED imaging in cells with DNA-labeled antibodies.

Angew. Chem. Int. Ed. Engl. 58(52):18835-18838. doi: 10.1002/anie.201910115
Europe PMC | doi

Frei MS, Hoess P, Lampe M, Nijmeijer B, Kueblbeck M, Ellenberg J, Wadepohl H, Ries J, Pitsch S, Reymond L, Johnsson K. (2019)

Photoactivation of silicon rhodamines via a light-induced protonation.

Nat Commun 10(1) doi: 10.1038/s41467-019-12480-3
Europe PMC | doi

Durdevic Z, Ephrussi A. (2019)

Germ cell lineage homeostasis in Drosophila requires the Vasa RNA helicase.

Genetics 213(3):911-922. doi: 10.1534/genetics.119.302558
Europe PMC | doi

Matos AM, Pinto FR, Barros P, Amaral MD, Pepperkok R, Matos P. (2019)

Inhibition of calpain 1 restores plasma membrane stability to pharmacologically rescued Phe508del-CFTR variant.

J. Biol. Chem. 294(36):13396-13410. doi: 10.1074/jbc.RA119.008738
Europe PMC | doi

Toro-Nahuelpan M, Zagoriy I, Senger F, Blanchoin L, Thery M, Mahamid J. (2019)

Tailoring cryo-electron microscopy grids by photo-micropatterning for in-cell structural studies.

bioRxivorg doi: 10.1101/676189
doi

Bykov YS, Cohen N, Gabrielli N, Manenschijn H, Welsch S, Chlanda P, Kukulski W, Patil KR, Schuldiner M, Briggs JAG. (2019)

High-throughput ultrastructure screening using electron microscopy and fluorescent barcoding.

J. Cell Biol. 218(8):2797-2811. doi: 10.1083/jcb.201812081
Europe PMC | doi

Krueger D, Quinkler T, Mortensen SA, Sachse C, De Renzis S. (2019)

Cross-linker-mediated regulation of actin network organization controls tissue morphogenesis.

J. Cell Biol. 218(8):2743-2761. doi: 10.1083/jcb.201811127
Europe PMC | doi

Hassler M, Shaltiel IA, Kschonsak M, Simon B, Merkel F, Thärichen L, Bailey HJ, Macošek J, Bravo S, Metz J, Hennig J, Haering CH. (2019)

Structural basis of an asymmetric condensin ATPase cycle.

Mol. Cell 74(6):1175-1188.e9. doi: 10.1016/j.molcel.2019.03.037
Europe PMC | doi

Wagner N, Norlin N, Gierten J, de Medeiros G, Balázs B, Wittbrodt J, Hufnagel L, Prevedel R. (2019)

Instantaneous isotropic volumetric imaging of fast biological processes.

Nat. Methods 16(6) doi: 10.1038/s41592-019-0393-z
Europe PMC | doi

Lippens S, D'Enfert C, Farkas L, Kehres A, Korn B, Morales M, Pepperkok R, Premvardhan L, Schlapbach R, Tiran A, Meder D, Van Minnebruggen G. (2019)

One step ahead: Innovation in core facilities.

EMBO Rep. 20(4) doi: 10.15252/embr.201948017
Europe PMC | doi

Ryan AQ, Chan CJ, Graner F, Hiiragi T. (2019)

Lumen expansion facilitates epiblast-primitive endoderm fate specification in the mouse blastocyst formation.

bioRxivorg doi: 10.1101/575282
Europe PMC | doi

Villani A, Benjaminsen J, Moritz C, Henke K, Hartmann J, Norlin N, Richter K, Schieber NL, Franke T, Schwab Y, Peri F. (2019)

Clearance by microglia depends on packaging of phagosomes into a unique cellular compartment.

Dev. Cell 49(1):77-88.e7. doi: 10.1016/j.devcel.2019.02.014
Europe PMC | doi

Hauke S, Dutta AK, Eisenbeis VB, Bezold D, Bittner T, Wittwer C, Thakor D, Pavlovic I, Schultz C, Jessen HJ. (2019)

Photolysis of cell-permeant caged inositol pyrophosphates controls oscillations of cytosolic calcium in a β-cell line.

Chem Sci 10(9):2687-2692. doi: 10.1039/c8sc03479f
Europe PMC | doi

Horos R, Büscher M, Kleinendorst R, Alleaume AM, Tarafder AK, Schwarzl T, Dziuba D, Tischer C, Zielonka EM, Adak A, Castello A, Huber W, Sachse C, Hentze MW. (2019)

The small non-coding vault RNA1-1 acts as a riboregulator of autophagy.

Cell 176(5):1054-1067.e12. doi: 10.1016/j.cell.2019.01.030
Europe PMC | doi

Giacomello E, Ronchi P, Pepperkok R. (2019)

GM130 and p115 play a key role in the organisation of the early secretory pathway during skeletal muscle differentiation.

J. Cell. Sci. 132(2) doi: 10.1242/jcs.222083
Europe PMC | doi

Spahn C, Grimm JB, Lavis LD, Lampe M, Heilemann M. (2019)

Whole-Cell, 3D, and Multicolor STED Imaging with Exchangeable Fluorophores

NANO LETT 19(1):500-505. doi: 10.1021/acs.nanolett.8b04385
Europe PMC | doi

Bergiers I, Tischer C, Vargel Bölükbaşı Ö, Lancrin C. (2019)

Quantification of mouse hematopoietic progenitors' formation using time-lapse microscopy and image analysis.

Bio Protoc 9(1) doi: 10.21769/BioProtoc.3137
Europe PMC | doi


2018

Krueger D, Tardivo P, Nguyen C, De Renzis S. (2018)

Downregulation of basal myosin-II is required for cell shape changes and tissue invagination.

EMBO J 37(23) doi: 10.15252/embj.2018100170
Europe PMC | doi

Schor IE, Bussotti G, Maleš M, Forneris M, Viales RR, Enright AJ, Furlong EEM. (2018)

Non-coding RNA expression, function, and variation during Drosophila embryogenesis.

Curr. Biol. 28(22):3547-3561. doi: 10.1016/j.cub.2018.09.026
Europe PMC | doi

Klughammer N, Bischof J, Schnellbächer ND, Callegari A, Lénárt P, Schwarz US. (2018)

Cytoplasmic flows in starfish oocytes are fully determined by cortical contractions.

PLoS Comput Biol 14(11) doi: 10.1371/journal.pcbi.1006588
Europe PMC | doi

Ravikumar R, Kalbfuß N, Gendre D, Steiner A, Altmann M, Altmann S, Rybak K, Edelmann H, Stephan F, Lampe M, Facher E, Wanner G, Falter-Braun P, Bhalerao RP, Assaad FF. (2018)

Independent yet overlapping pathways ensure the robustness and responsiveness of trans-Golgi network functions in Arabidopsis.

Development 145(21) doi: 10.1242/dev.169201
Europe PMC | doi

Chartier TF, Deschamps J, Dürichen W, Jékely G, Arendt D. (2018)

Whole-head recording of chemosensory activity in the marine annelid Platynereis dumerilii.

Open Biol 8(10) doi: 10.1098/rsob.180139
Europe PMC | doi

Durdevic Z, Pillai RS, Ephrussi A. (2018)

Transposon silencing in the Drosophila female germline is essential for genome stability in progeny embryos.

Life science alliance 1(5) doi: 10.26508/lsa.201800179
Europe PMC | doi

Cai Y, Hossain MJ, Hériché JK, Politi AZ, Walther N, Koch B, Wachsmuth M, Nijmeijer B, Kueblbeck M, Martinic-Kavur M, Ladurner R, Alexander S, Peters JM, Ellenberg J. (2018)

Experimental and computational framework for a dynamic protein atlas of human cell division.

Nature 561(7723) doi: 10.1038/s41586-018-0518-z
Europe PMC | doi

Durrieu L, Kirrmaier D, Schneidt T, Kats I, Raghavan S, Hufnagel L, Saunders TE, Knop M. (2018)

Bicoid gradient formation mechanism and dynamics revealed by protein lifetime analysis.

Mol. Syst. Biol. 14(9) doi: 10.15252/msb.20188355
Europe PMC | doi

Moein M, Grzyb K, Gonçalves Martins T, Komoto S, Peri F, Crawford A, Fouquier d'Herouel A, Skupin A. (2018)

CaSiAn: a calcium signaling analyzer tool.

Bioinformatics 34(17):3052-3054. doi: 10.1093/bioinformatics/bty281
Europe PMC | doi

Hoffmann JE, Dziuba D, Stein F, Schultz C. (2018)

A Bifunctional Noncanonical Amino Acid: Synthesis, Expression, and Residue-Specific Proteome-wide Incorporation.

Biochemistry 57(31) doi: 10.1021/acs.biochem.8b00397
Europe PMC | doi

Burdyniuk M, Callegari A, Mori M, Nédélec F, Lénárt P. (2018)

F-Actin nucleated on chromosomes coordinates their capture by microtubules in oocyte meiosis.

J. Cell Biol. 217(8) doi: 10.1083/jcb.201802080
Europe PMC | doi

Reichmann J, Nijmeijer B, Hossain MJ, Eguren M, Schneider I, Politi AZ, Roberti MJ, Hufnagel L, Hiiragi T, Ellenberg J. (2018)

Dual-spindle formation in zygotes keeps parental genomes apart in early mammalian embryos.

Science 361(6398):189-193. doi: 10.1126/science.aar7462
Europe PMC | doi

Schiklenk C, Petrova B, Kschonsak M, Hassler M, Klein C, Gibson TJ, Haering CH. (2018)

Control of mitotic chromosome condensation by the fission yeast transcription factor Zas1

Journal of Cell Biology 217(7) doi: 10.1083/jcb.201711097
Europe PMC | doi

Walther N, Hossain MJ, Politi AZ, Koch B, Kueblbeck M, Ødegård-Fougner Ø, Lampe M, Ellenberg J. (2018)

A quantitative map of human Condensins provides new insights into mitotic chromosome architecture.

J Cell Biol 217(7) doi: 10.1083/jcb.201801048
Europe PMC | doi

Durdevic Z, Pillai RS, Ephrussi A. (2018)

Transposon silencing in the Drosophila female germline ensures genome stability in progeny embryos.

bioRxiv doi: 10.1101/363028
doi

Koch B, Nijmeijer B, Kueblbeck M, Cai Y, Walther N, Ellenberg J. (2018)

Generation and validation of homozygous fluorescent knock-in cells using CRISPR-Cas9 genome editing.

Nat Protoc 13(6):1465-1487. doi: 10.1038/nprot.2018.042
Europe PMC | doi

Politi AZ, Cai Y, Walther N, Hossain MJ, Koch B, Wachsmuth M, Ellenberg J. (2018)

Quantitative mapping of fluorescently tagged cellular proteins using FCS-calibrated four-dimensional imaging.

Nat Protoc 13(6):1445-1464. doi: 10.1038/nprot.2018.040
Europe PMC | doi

Izquierdo E, Quinkler T, De Renzis S. (2018)

Guided morphogenesis through optogenetic activation of Rho signalling during early Drosophila embryogenesis.

Nat Commun 9(1) doi: 10.1038/s41467-018-04754-z
Europe PMC | doi

Xiang W, Roberti MJ, Hériché JK, Huet S, Alexander S, Ellenberg J. (2018)

Correlative live and super-resolution imaging reveals the dynamic structure of replication domains.

J Cell Biol 217(6) doi: 10.1083/jcb.201709074
Europe PMC | doi

Becher I, Andrés-Pons A, Romanov N, Stein F, Schramm M, Baudin F, Helm D, Kurzawa N, Mateus A, Mackmull MT, Typas A, Müller CW, Bork P, Beck M, Savitski MM. (2018)

Pervasive protein thermal stability variation during the cell cycle.

Cell 173(6) doi: 10.1016/j.cell.2018.03.053
Europe PMC | doi

Burdyniuk M, Wesolowska N, Fleszar M, Karreman MA, Machado P, Borrego-Pinto J, Ruthensteiner B, Schwab Y, Lénárt P. (2018)

Correlated light and electron microscopy of cell division in large marine oocytes, eggs, and embryos.

Methods Cell Biol. 145:293-313. doi: 10.1016/bs.mcb.2018.03.031
Europe PMC | doi

Walther N, Ellenberg J. (2018)

Quantitative live and super-resolution microscopy of mitotic chromosomes

Methods Cell Biol. 145 doi: 10.1016/bs.mcb.2018.03.014
Europe PMC | doi

Salvatore C, Malinverno C, Neumann B, Tischer C, Palamidessi A, Frittoli E, Panagiotakopoulou M, Disanza A, Malet-Engra G, Nastaly P, Galli C, Luise C, Bertalot G, Pece S, Di Fiore PP, Gauthier N, Ferrari A, Maiuri P, Scita G. (2018)

A RAB35-p85/PI3K axis controls oscillatory apical protrusions required for efficient chemotactic migration.

Nat Commun 9(1) doi: 10.1038/s41467-018-03571-8
Europe PMC | doi

Cusanovich DA, Reddington JP, Garfield DA, Daza RM, Aghamirzaie D, Marco-Ferreres R, Pliner HA, Christiansen L, Qiu X, Steemers FJ, Trapnell C, Shendure J, Furlong EEM. (2018)

The cis-regulatory dynamics of embryonic development at single-cell resolution.

Nature 555(7697):538-542. doi: 10.1038/nature25981
Europe PMC | doi

Gaspar I, Hövelmann F, Chamiolo J, Ephrussi A, Seitz O. (2018)

Quantitative mRNA imaging with dual channel qFIT probes to monitor distribution and degree of hybridization.

ACS Chem Biol 13(3):742-749. doi: 10.1021/acschembio.7b01007
Europe PMC | doi

Shembekar N, Hu H, Eustace D, Merten CA. (2018)

Single-cell droplet microfluidic screening for antibodies specifically binding to target cells.

Cell Rep 22(8):2206-2215. doi: 10.1016/j.celrep.2018.01.071
Europe PMC | doi

Lérias JR, Pinto MC, Botelho HM, Awatade NT, Quaresma MC, Silva IAL, Wanitchakool P, Schreiber R, Pepperkok R, Kunzelmann K, Amaral MD. (2018)

A novel microscopy-based assay identifies extended synaptotagmin-1 (ESYT1) as a positive regulator of anoctamin 1 traffic.

Biochim. Biophys. Acta 1865(2) doi: 10.1016/j.bbamcr.2017.11.009
Europe PMC | doi

Bun P, Dmitrieff S, Belmonte JM, Nédélec FJ, Lénárt P. (2018)

A disassembly-driven mechanism explains F-actin-mediated chromosome transport in starfish oocytes

Elife 7 doi: 10.7554/eLife.31469
Europe PMC | doi

Eggert S, Gonzalez AC, Thomas C, Schilling S, Schwarz SM, Tischer C, Adam V, Strecker P, Schmidt V, Willnow TE, Hermey G, Pietrzik CU, Koo EH, Kins S. (2018)

Dimerization leads to changes in APP (amyloid precursor protein) trafficking mediated by LRP1 and SorLA.

Cell. Mol. Life Sci. 75(2) doi: 10.1007/s00018-017-2625-7
Europe PMC | doi

Mikhaylichenko O, Bondarenko V, Harnett D, Schor IE, Males M, Viales RR, Furlong EEM. (2018)

The degree of enhancer or promoter activity is reflected by the levels and directionality of eRNA transcription.

Genes Dev 32(1):42-57. doi: 10.1101/gad.308619.117
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2017

Hoeger B, Rios P, Berteotti A, Hoermann B, Duan G, Köhn M. (2017)

Mutational Analysis of a Conserved Glutamate Reveals Unique Mechanistic and Structural Features of the Phosphatase PRL-3.

ACS Omega 2(12):9171-9180. doi: 10.1021/acsomega.7b01208
Europe PMC | doi

Guglielmi G, De Renzis S. (2017)

Optogenetic inhibition of apical constriction during Drosophila embryonic development.

Methods Cell Biol. 139:167-186. doi: 10.1016/bs.mcb.2016.10.007
Europe PMC | doi

Mackmull MT, Klaus B, Heinze I, Chokkalingam M, Beyer A, Russell RB, Ori A, Beck M. (2017)

Landscape of nuclear transport receptor cargo specificity.

Mol. Syst. Biol. 13(12) doi: 10.15252/msb.20177608
Europe PMC | doi

Reckel S, Gehin C, Tardivon D, Georgeon S, Kükenshöner T, Löhr F, Koide A, Buchner L, Panjkovich A, Reynaud A, Pinho S, Gerig B, Svergun D, Pojer F, Güntert P, Dötsch V, Koide S, Gavin AC, Hantschel O. (2017)

Structural and functional dissection of the DH and PH domains of oncogenic Bcr-Abl tyrosine kinase.

Nat Commun 8(1) doi: 10.1038/s41467-017-02313-6
Europe PMC | doi

Ríos-Barrera LD, Sigurbjörnsdóttir S, Baer M, Leptin M. (2017)

Dual function for Tango1 in secretion of bulky cargo and in ER-Golgi morphology.

Proc. Natl. Acad. Sci. U.S.A. 114(48) doi: 10.1073/pnas.1711408114
Europe PMC | doi

Colin S, Coelho LP, Sunagawa S, Bowler C, Karsenti E, Bork P, Pepperkok R, de Vargas C. (2017)

Quantitative 3D-imaging for cell biology and ecology of environmental microbial eukaryotes.

Elife 6 doi: 10.7554/eLife.26066
Europe PMC | doi

Kschonsak M, Merkel F, Bisht S, Metz J, Rybin V, Hassler M, Haering CH. (2017)

Structural Basis for a Safety-Belt Mechanism That Anchors Condensin to Chromosomes.

Cell 171(3):588-600. doi: 10.1016/j.cell.2017.09.008
Europe PMC | doi

Kumar V, Fleming T, Terjung S, Gorzelanny C, Gebhardt C, Agrawal R, Mall MA, Ranzinger J, Zeier M, Madhusudhan T, Ranjan S, Isermann B, Liesz A, Deshpande D, Häring HU, Biswas SK, Reynolds PR, Hammes HP, Peperkok R, Angel P, Herzig S, Nawroth PP. (2017)

Homeostatic nuclear RAGE-ATM interaction is essential for efficient DNA repair.

Nucleic Acids Res. 45(18):10595-10613. doi: 10.1093/nar/gkx705
Europe PMC | doi

Bischof J, Brand CA, Somogyi K, Májer I, Thome S, Mori M, Schwarz US, Lénárt P. (2017)

A cdk1 gradient guides surface contraction waves in oocytes.

Nat Commun 8(1) doi: 10.1038/s41467-017-00979-6
Europe PMC | doi

Gaspar I, Wippich F, Ephrussi A. (2017)

Enzymatic production of single molecule FISH and RNA capture probes.

RNA 23(10):1582-1591. doi: 10.1261/rna.061184.117
Europe PMC | doi

Kuri P, Schieber NL, Thumberger T, Wittbrodt J, Schwab Y, Leptin M. (2017)

Dynamics of in vivo ASC speck formation.

J Cell Biol 216(9) doi: 10.1083/jcb.201703103
Europe PMC | doi

Frank JA, Yushchenko DA, Fine NHF, Duca M, Citir M, Broichhagen J, Hodson DJ, Schultz C, Trauner D. (2017)

Optical control of GPR40 signalling in pancreatic beta-cells

CHEM SCI 8(11):7604-7610. doi: 10.1039/c7sc01475a
Europe PMC | doi

Lujan P, Rubio T, Varsano G, Köhn M. (2017)

Keep it on the edge: The post-mitotic midbody as a polarity signal unit.

Commun Integr Biol 10(4) doi: 10.1080/19420889.2017.1338990
Europe PMC | doi

Vergara HM, Bertucci PY, Hantz P, Tosches MA, Achim K, Vopalensky P, Arendt D. (2017)

Whole-organism cellular gene-expression atlas reveals conserved cell types in the ventral nerve cord of Platynereis dumerilii.

Proc Natl Acad Sci U S A 114(23):5878-5885. doi: 10.1073/pnas.1610602114
Europe PMC | doi

Jeske M, Müller CW, Ephrussi A. (2017)

The LOTUS domain is a conserved DEAD-box RNA helicase regulator essential for the recruitment of Vasa to the germ plasm and nuage.

Genes Dev 31(9) doi: 10.1101/gad.297051.117
Europe PMC | doi