Custom software, plugins and macros written by ALMF staff

Image analysis and visualisation

  • FiJi (based on ImageJ) - Open source image analysis software with large user and developer community.
  • Cellprofiler - Open source image analysis for large datasets (high-throughput)
  • Imaris (Bitplane / Oxford Instruments): Commercial 4D analysis and visualization tool. We offer several floating licenses.

FRAP analysis

  • FRAPAnalyser (A. Halavatyi et al.)
  • EasyFRAP (Koulouras et al 2018, University of Patras, Greece)
  • FrapCalc (IgorPro procedure to analyze FRAP data by K. Miura)

Conversion and viewing tools