Publications

Total: 18 publication(s)

2020

Erarslan-Uysal B, Kunz JB, Rausch T, Richter-Pechańska P, van Belzen IA, Frismantas V, Bornhauser B, Ordoñez-Rueada D, Paulsen M, Benes V, Stanulla M, Schrappe M, Cario G, Escherich G, Bakharevich K, Kirschner-Schwabe R, Eckert C, Loukanov T, Gorenflo M, Waszak SM, Bourquin JP, Muckenthaler MU, Korbel JO, Kulozik AE. (2020)

Chromatin accessibility landscape of pediatric T-lymphoblastic leukemia and human T-cell precursors.

EMBO Mol Med doi: 10.15252/emmm.202012104
Europe PMC | doi

Roider T, Wang X, Hüttl K, Müller-Tidow C, Klapper W, Rosenwald A, Stewart JP, Gonzalez de Castro D, Dreger P, Hermine O, Kluin-Nelemans HC, Grabe N, Dreyling M, Pott C, Ott G, Hoster E, Dietrich S. (2020)

The impact of SAMHD1 expression and mutation status in mantle cell lymphoma: An analysis of the MCL Younger and Elderly trial.

Int. J. Cancer doi: 10.1002/ijc.33202
Europe PMC | doi

Roider T, Seufert J, Uvarovskii A, Frauhammer F, Bordas M, Abedpour N, Stolarczyk M, Mallm JP, Herbst SA, Bruch PM, Balke-Want H, Hundemer M, Rippe K, Goeppert B, Seiffert M, Brors B, Mechtersheimer G, Zenz T, Peifer M, Chapuy B, Schlesner M, Müller-Tidow C, Fröhling S, Huber W, Anders S, Dietrich S. (2020)

Dissecting intratumour heterogeneity of nodal B-cell lymphomas at the transcriptional, genetic and drug-response levels.

Nat. Cell Biol. 22(7):896-906. doi: 10.1038/s41556-020-0532-x
Europe PMC | doi

Mueller WF, Jakob P, Sun H, Clauder-Münster S, Ghidelli-Disse S, Ordonez D, Boesche M, Bantscheff M, Collier P, Haase B, Benes V, Paulsen M, Sehr P, Lewis J, Drewes G, Steinmetz LM. (2020)

Loss of N-glycanase 1 alters transcriptional and translational regulation in K562 cell lines.

G3 (Bethesda) 10(5) doi: 10.1534/g3.119.401031
Europe PMC | doi

Gallus S, Peschke T, Paulsen M, Burgahn T, Niemeyer CM, Rabe KS. (2020)

Surface display of complex enzymes by in situ SpyCatcher-SpyTag interaction.

Chembiochem 21(15) doi: 10.1002/cbic.202000102
Europe PMC | doi

van Jaarsveld MTM, Deng D, Ordoñez-Rueda D, Paulsen M, Wiemer EAC, Zi Z. (2020)

Cell-type-specific role of CHK2 in mediating DNA damage-induced G2 cell cycle arrest.

Oncogenesis 9(3) doi: 10.1038/s41389-020-0219-y
Europe PMC | doi


2019

Liebers N, Roider T, Bohn JP, Haberbosch I, Pircher A, Ferstl B, Ebnöther M, Wendtner CM, Dearden C, Follows GA, Ho AD, Müller-Tidow C, Dreger P, Troussard X, Zenz T, Dietrich S. (2019)

BRAF inhibitor treatment in classic hairy cell leukemia: a long-term follow-up study of patients treated outside clinical trials.

Leukemia 34(5) doi: 10.1038/s41375-019-0646-y
Europe PMC | doi

Cossarizza A, Chang HD, Radbruch A, Acs A, Adam D, Adam-Klages S, Agace WW, Aghaeepour N, Akdis M, Allez M, Almeida LN, Alvisi G, Anderson G, Andrä I, Annunziato F, Bacher P, Anselmo A, Bari S, Baldari CT, Barros-Martins J, Barnaba V, Bauer W, Battistini L, Baumgarth N, Baumgart S, Baying B, Baumjohann D, Becher B, Bebawy M, Benes V, Beisker W, Boardman DA, Bogdan C, Beyaert R, Blanco A, Boulais PE, Bradford JA, Borger JG, Borsellino G, Brooks AES, Busch DH, Brenner D, Brinkman RR, Calzetti F, Cameron G, Büscher M, Bushnell TP, Casola S, Cardell SL, Cao X, Cammarata I, Chatenoud L, Celada A, Cavani A, Cassatella MA, Čičin-Šain L, Christakou E, Chow S, Chattopadhyay PK, Cooke A, Cook L, Colombo FS, Clerici M, Coulie PG, Cumano A, Cvetkovic L, Dang VD, Cooper AM, Corbett AJ, Cosma A, Cosmi L, Del Zotto G, Dela Cruz GV, Delacher M, Della Bella S, Dang-Heine C, Davey MS, Davies D, De Biasi S, Dieli F, Diefenbach A, Dörner T, Dolf A, Deniz G, Dellabona P, Di Santo JP, Dessing M, Eckle SBG, Ebner F, Eede P, Edinger M, Dudziak D, Dress RJ, Dutertre CA, Dustin M, Everts B, Evrard M, Erdei A, Esser C, Engel P, Engelhardt B, Ehrhardt GRA, Eich M, Filkor K, Fillatreau S, Feuerer M, Filby A, Felipo-Benavent M, Ferry H, Falk CS, Fehniger TA, Fritzsche W, Frischbutter S, Frenette PS, Frehse B, Foulds GA, Foster J, Förster I, Follo M, Gherardin NA, Gerner W, Geginat J, Gazzinelli RT, Gaudilliere B, Garbi N, Gangaev A, Galbraith DW, Grogan JL, Gori A, Grützkau A, Grummitt D, Hahn J, Haftmann C, Hämmerling G, Hammad H, Gibellini L, Ghoreschi K, Goda K, Ginhoux F, Goettlinger C, Godfrey DI, Goodyear CS, González-Navajas JM, Hernández DC, Herrera G, Herrmann M, Hess C, Höfer T, Hoffmann P, Hogquist K, Holland T, Hansmann L, Hansson G, Harpur CM, Hartmann S, Hauser A, Hauser AE, Haviland DL, Hedley D, Hwang WYK, Hunter CA, Hundemer M, Huehn J, Jäck HM, Ivison SM, Ingelfinger F, Iannone A, Houston JP, Hombrink P, Holmdahl R, Höllt T, Huber JE, Huang FP, Huang B, Hoyer BF, Khan S, Kisielow J, Ketelaars SLC, Khalilnezhad A, Koay HF, Kobow K, Klenerman P, Knopf J, Jonjic S, Kaiser T, Jani PK, Jávega B, Kaufmann SHE, Keller B, Kalina T, Kamradt T, Kurts C, Kurosaki T, Kwok I, Kvistborg P, Kukat C, Kühne J, Kunze-Schumacher H, Kunkel D, Kristyanto H, Kriegsmann K, Krueger A, Kroneis T, Kong WT, Kolls JK, Korn T, Kopf M, Liu Y, Ljunggren HG, Lohoff M, Lombardi G, Levings MK, Lino AC, Liotta F, Litwin V, Lehuen A, LeibundGut-Landmann S, Leipold MD, Leung LYT, Landry J, Lantz O, Lanuti P, LaRosa F, Marshall AJ, Manz RA, Mantovani A, Mair KH, Mair F, Maguire O, Maggi L, Maecker HT, Lunemann S, Lugli E, Ludewig B, Luche H, Lubberts E, Lovett-Racke AE, López-Botet M, Lopez L, Melzer S, Mielenz D, Mei HE, Melchers F, McGuire HM, McInnes IB, McCluskey J, McGrath M, Maueröder C, Mazzoni A, Matarese G, Mattioli AV, Marventano I, Maslinski W, Martínez-Romero A, Martrus G, O'Connor JE, Núñez G, Nourshargh S, Niedobitek A, Orfao A, Ordonez D, Oja A, Ochel A, Palankar R, Oxenius A, Ouyang W, Orlowski-Oliver E, Pavlinic D, Paulsen M, Pattanapanyasat K, Panse I, Minderman H, Mjösberg J, Miller SD, Mills KHG, Moretta L, Mosmann TR, Moore J, Moran B, Muñoz LE, Münz C, Müller S, Multhoff G, Neumann K, Ng LG, Nakayama T, Nasi M, Radbruch H, Quinn KM, Rahmig S, Radstake TRDJ, Rajwa B, Rahn HP, Raz Y, Ravichandran G, Recktenwald D, Rebhahn JA, Reis E Sousa C, Reimer D, Richter L, Remmerswaal EBM, Riddell A, Rico LG, Penter L, Peterson P, Peth C, Petriz J, Piancone F, Pickl WF, Piconese S, Pinti M, Pockley AG, Podolska MJ, Poon Z, Pracht K, Prinz I, Pucillo CEM, Quataert SA, Quatrini L, Schimisky E, Schildberg FA, Schiemann M, Scherer HU, Scheffold A, Schadt L, Sawitzki B, Sautes-Fridman C, Schüler T, Schuh W, Schraivogel D, Schober K, Schmitt S, Schmid S, Schlosser J, Schlitzer A, Saeys Y, Saito T, Ruland J, Saalmüller A, Romagnani C, Rubartelli A, Rieger AM, Robinson JP, Sanz RB, Saresella M, Sandrock I, Santoni A, Samstag Y, Sanderson S, Sakaguchi S, Sala-de-Oyanguren F, Takeda K, Takahama Y, Tárnok A, Tan L, Stehle C, Stark R, Stockinger H, Steinmetz T, Tree TIM, Trebak M, Trowsdale J, Trotter J, Toldi G, Tiegs G, Traggiai E, Tornack J, Scott-Algara D, Sester DP, Shankey TV, Silva-Santos B, Schulte R, Schulz AR, Schulz SR, Scottá C, Spidlen J, Stahlberg A, Stall AM, Stanley N, Simon AK, Sitnik KM, Sozzani S, Speiser DE, Waskow C, Watson JV, Warnes G, Warth S, Weisenburger T, Wiedemann A, Watzl C, Wegener L, Wallace PK, Wang SA, Waisman A, Walker RV, Ward-Hartstonge KA, Warnatz K, Wang XM, Ward MD, Vieira P, Vento-Asturias S, Veldhoen M, van Lier RAW, von Volkmann K, von Borstel A, Volk HD, Voehringer D, van de Veen W, Urbanczyk S, Ulrich H, Tsoumakidou M, Van Isterdael G, Van Gassen S, van der Pol E, van den Broek M, Zhao Y, Ziegler SM, Zielinski C, Zimmermann J, Zychlinsky A, Wurst P, Wong A, Yang J, Yang JHM, Yu L, Yazdanbakhsh M, Zhang H, Yue A, Wilharm A, Wienands J, Willimsky G, Wilkinson RJ, Winkelmann R, Wing JB, Wirz OF, Winkler TH. (2019)

Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition).

Eur. J. Immunol. 49(10):1457-1973. doi: 10.1002/eji.201970107
Europe PMC | doi

Ordoñez-Rueda D, Baying B, Pavlinic D, Alessandri L, Yeboah Y, Landry JJM, Calogero R, Benes V, Paulsen M. (2019)

Apoptotic cell exclusion and bias-free single-cell selection are important quality control requirements for successful single-cell sequencing applications.

Cytometry A 97(2) doi: 10.1002/cyto.a.23898
Europe PMC | doi


2017

Tomlin FM, Gerling-Driessen UIM, Liu YC, Flynn RA, Vangala JR, Lentz CS, Clauder-Muenster S, Jakob P, Mueller WF, Ordoñez-Rueda D, Paulsen M, Matsui N, Foley D, Rafalko A, Suzuki T, Bogyo M, Steinmetz LM, Radhakrishnan SK, Bertozzi CR. (2017)

Inhibition of NGLY1 Inactivates the Transcription Factor Nrf1 and Potentiates Proteasome Inhibitor Cytotoxicity.

ACS Cent Sci 3(11):1143-1155. doi: 10.1021/acscentsci.7b00224
Europe PMC | doi


2015

Riddell A, Gardner R, Perez-Gonzalez A, Lopes T, Martinez L. (2015)

Rmax: A systematic approach to evaluate instrument sort performance using center stream catch

Methods 82:64-73. doi: 10.1016/j.ymeth.2015.02.017
Europe PMC | doi


2014

Mahen R, Koch B, Wachsmuth M, Politi AZ, Perez-Gonzalez A, Mergenthaler J, Cai Y, Ellenberg J. (2014)

Comparative assessment of fluorescent transgene methods for quantitative imaging in human cells

Mol. Biol. Cell 25(22):3610-3618. doi: 10.1091/mbc.e14-06-1091
Europe PMC | doi

Blake J, Riddell A, Theiss S, Gonzalez AP, Haase B, Jauch A, Janssen JW, Ibberson D, Pavlinic D, Moog U, Benes V, Runz H. (2014)

Sequencing of a patient with balanced chromosome abnormalities and neurodevelopmental disease identifies disruption of multiple high risk loci by structural variation

PLoS ONE 9(3):e90894. doi: 10.1371/journal.pone.0090894
Europe PMC | doi


2012

Bonn S, Zinzen RP, Perez-Gonzalez A, Riddell A, Gavin AC, Furlong EE. (2012)

Cell type-specific chromatin immunoprecipitation from multicellular complex samples using BiTS-ChIP

Nat Protoc 7(5):978-994. doi: 10.1038/nprot.2012.049
Europe PMC | doi

Bonn S, Zinzen RP, Girardot C, Gustafson EH, Perez-Gonzalez A, Delhomme N, Ghavi-Helm Y, Wilczyński B, Riddell A, Furlong EE. (2012)

Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development

Nat. Genet. 44(2):148-156. doi: 10.1038/ng.1064
Europe PMC | doi


2011

Caramalho I, Rodrigues-Duarte L, Perez A, Zelenay S, Penha-Gonçalves C, Demengeot J. (2011)

Regulatory T cells contribute to diabetes protection in lipopolysaccharide-treated non-obese diabetic mice

Scand. J. Immunol. 74(6):585-595. doi: 10.1111/j.1365-3083.2011.02627.x
Europe PMC | doi


2010

Prakash H, Lüth A, Grinkina N, Holzer D, Wadgaonkar R, Gonzalez AP, Anes E, Kleuser B. (2010)

Sphingosine kinase-1 (SphK-1) regulates Mycobacterium smegmatis infection in macrophages

PLoS ONE 5(5):e10657. doi: 10.1371/journal.pone.0010657
Europe PMC | doi


2009

Gutierrez MG, Gonzalez AP, Anes E, Griffiths G. (2009)

Role of lipids in killing mycobacteria by macrophages: evidence for NF-kappaB-dependent and -independent killing induced by different lipids

Cell. Microbiol. 11(3):406-420. doi: 10.1111/j.1462-5822.2008.01263.x
Europe PMC | doi