EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

Publications

Total: 11 publication(s)

2020

Oatley M, Bölükbası ÖV, Svensson V, Shvartsman M, Ganter K, Zirngibl K, Pavlovich PV, Milchevskaya V, Foteva V, Natarajan KN, Baying B, Benes V, Patil KR, Teichmann SA, Lancrin C. (2020)

Single-cell transcriptomics identifies CD44 as a marker and regulator of endothelial to haematopoietic transition.

Nat Commun 11(1) doi: 10.1038/s41467-019-14171-5
Europe PMC | doi


2019

Cossarizza A, Chang HD, Radbruch A, Acs A, Adam D, Adam-Klages S, Agace WW, Aghaeepour N, Akdis M, Allez M, Almeida LN, Alvisi G, Anderson G, Andrä I, Annunziato F, Bacher P, Anselmo A, Bari S, Baldari CT, Barros-Martins J, Barnaba V, Bauer W, Battistini L, Baumgarth N, Baumgart S, Baying B, Baumjohann D, Becher B, Bebawy M, Benes V, Beisker W, Boardman DA, Bogdan C, Beyaert R, Blanco A, Boulais PE, Bradford JA, Borger JG, Borsellino G, Brooks AES, Busch DH, Brenner D, Brinkman RR, Calzetti F, Cameron G, Büscher M, Bushnell TP, Casola S, Cardell SL, Cao X, Cammarata I, Chatenoud L, Celada A, Cavani A, Cassatella MA, Čičin-Šain L, Christakou E, Chow S, Chattopadhyay PK, Cooke A, Cook L, Colombo FS, Clerici M, Coulie PG, Cumano A, Cvetkovic L, Dang VD, Cooper AM, Corbett AJ, Cosma A, Cosmi L, Del Zotto G, Dela Cruz GV, Delacher M, Della Bella S, Dang-Heine C, Davey MS, Davies D, De Biasi S, Dieli F, Diefenbach A, Dörner T, Dolf A, Deniz G, Dellabona P, Di Santo JP, Dessing M, Eckle SBG, Ebner F, Eede P, Edinger M, Dudziak D, Dress RJ, Dutertre CA, Dustin M, Everts B, Evrard M, Erdei A, Esser C, Engel P, Engelhardt B, Ehrhardt GRA, Eich M, Filkor K, Fillatreau S, Feuerer M, Filby A, Felipo-Benavent M, Ferry H, Falk CS, Fehniger TA, Fritzsche W, Frischbutter S, Frenette PS, Frehse B, Foulds GA, Foster J, Förster I, Follo M, Gherardin NA, Gerner W, Geginat J, Gazzinelli RT, Gaudilliere B, Garbi N, Gangaev A, Galbraith DW, Grogan JL, Gori A, Grützkau A, Grummitt D, Hahn J, Haftmann C, Hämmerling G, Hammad H, Gibellini L, Ghoreschi K, Goda K, Ginhoux F, Goettlinger C, Godfrey DI, Goodyear CS, González-Navajas JM, Hernández DC, Herrera G, Herrmann M, Hess C, Höfer T, Hoffmann P, Hogquist K, Holland T, Hansmann L, Hansson G, Harpur CM, Hartmann S, Hauser A, Hauser AE, Haviland DL, Hedley D, Hwang WYK, Hunter CA, Hundemer M, Huehn J, Jäck HM, Ivison SM, Ingelfinger F, Iannone A, Houston JP, Hombrink P, Holmdahl R, Höllt T, Huber JE, Huang FP, Huang B, Hoyer BF, Khan S, Kisielow J, Ketelaars SLC, Khalilnezhad A, Koay HF, Kobow K, Klenerman P, Knopf J, Jonjic S, Kaiser T, Jani PK, Jávega B, Kaufmann SHE, Keller B, Kalina T, Kamradt T, Kurts C, Kurosaki T, Kwok I, Kvistborg P, Kukat C, Kühne J, Kunze-Schumacher H, Kunkel D, Kristyanto H, Kriegsmann K, Krueger A, Kroneis T, Kong WT, Kolls JK, Korn T, Kopf M, Liu Y, Ljunggren HG, Lohoff M, Lombardi G, Levings MK, Lino AC, Liotta F, Litwin V, Lehuen A, LeibundGut-Landmann S, Leipold MD, Leung LYT, Landry J, Lantz O, Lanuti P, LaRosa F, Marshall AJ, Manz RA, Mantovani A, Mair KH, Mair F, Maguire O, Maggi L, Maecker HT, Lunemann S, Lugli E, Ludewig B, Luche H, Lubberts E, Lovett-Racke AE, López-Botet M, Lopez L, Melzer S, Mielenz D, Mei HE, Melchers F, McGuire HM, McInnes IB, McCluskey J, McGrath M, Maueröder C, Mazzoni A, Matarese G, Mattioli AV, Marventano I, Maslinski W, Martínez-Romero A, Martrus G, O'Connor JE, Núñez G, Nourshargh S, Niedobitek A, Orfao A, Ordonez D, Oja A, Ochel A, Palankar R, Oxenius A, Ouyang W, Orlowski-Oliver E, Pavlinic D, Paulsen M, Pattanapanyasat K, Panse I, Minderman H, Mjösberg J, Miller SD, Mills KHG, Moretta L, Mosmann TR, Moore J, Moran B, Muñoz LE, Münz C, Müller S, Multhoff G, Neumann K, Ng LG, Nakayama T, Nasi M, Radbruch H, Quinn KM, Rahmig S, Radstake TRDJ, Rajwa B, Rahn HP, Raz Y, Ravichandran G, Recktenwald D, Rebhahn JA, Reis E Sousa C, Reimer D, Richter L, Remmerswaal EBM, Riddell A, Rico LG, Penter L, Peterson P, Peth C, Petriz J, Piancone F, Pickl WF, Piconese S, Pinti M, Pockley AG, Podolska MJ, Poon Z, Pracht K, Prinz I, Pucillo CEM, Quataert SA, Quatrini L, Schimisky E, Schildberg FA, Schiemann M, Scherer HU, Scheffold A, Schadt L, Sawitzki B, Sautes-Fridman C, Schüler T, Schuh W, Schraivogel D, Schober K, Schmitt S, Schmid S, Schlosser J, Schlitzer A, Saeys Y, Saito T, Ruland J, Saalmüller A, Romagnani C, Rubartelli A, Rieger AM, Robinson JP, Sanz RB, Saresella M, Sandrock I, Santoni A, Samstag Y, Sanderson S, Sakaguchi S, Sala-de-Oyanguren F, Takeda K, Takahama Y, Tárnok A, Tan L, Stehle C, Stark R, Stockinger H, Steinmetz T, Tree TIM, Trebak M, Trowsdale J, Trotter J, Toldi G, Tiegs G, Traggiai E, Tornack J, Scott-Algara D, Sester DP, Shankey TV, Silva-Santos B, Schulte R, Schulz AR, Schulz SR, Scottá C, Spidlen J, Stahlberg A, Stall AM, Stanley N, Simon AK, Sitnik KM, Sozzani S, Speiser DE, Waskow C, Watson JV, Warnes G, Warth S, Weisenburger T, Wiedemann A, Watzl C, Wegener L, Wallace PK, Wang SA, Waisman A, Walker RV, Ward-Hartstonge KA, Warnatz K, Wang XM, Ward MD, Vieira P, Vento-Asturias S, Veldhoen M, van Lier RAW, von Volkmann K, von Borstel A, Volk HD, Voehringer D, van de Veen W, Urbanczyk S, Ulrich H, Tsoumakidou M, Van Isterdael G, Van Gassen S, van der Pol E, van den Broek M, Zhao Y, Ziegler SM, Zielinski C, Zimmermann J, Zychlinsky A, Wurst P, Wong A, Yang J, Yang JHM, Yu L, Yazdanbakhsh M, Zhang H, Yue A, Wilharm A, Wienands J, Willimsky G, Wilkinson RJ, Winkelmann R, Wing JB, Wirz OF, Winkler TH. (2019)

Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition).

Eur. J. Immunol. 49(10):1457-1973. doi: 10.1002/eji.201970107
Europe PMC | doi

Ordoñez-Rueda D, Baying B, Pavlinic D, Alessandri L, Yeboah Y, Landry JJM, Calogero R, Benes V, Paulsen M. (2019)

Apoptotic cell exclusion and bias-free single-cell selection are important quality control requirements for successful single-cell sequencing applications.

Cytometry A 97(2) doi: 10.1002/cyto.a.23898
Europe PMC | doi


2018

Franke N, Bette M, Marquardt A, Briese T, Lipkin WI, Kurz C, Ehrenreich J, Mack E, Baying B, Beneš V, Rodepeter FR, Neff A, Teymoortash A, Eivazi B, Geisthoff U, Bakowsky U, Stuck BA, Mandic R. (2018)

Virome Analysis Reveals No Association of Head and Neck Vascular Anomalies with an Active Viral Infection.

In Vivo 32(6):1323-1331. doi: 10.21873/invivo.11382
Europe PMC | doi

Oatley M, Vargel O, Svensson V, Shvartsman M, Ganter K, Zirngibl K, Pavlovich PV, Milchevskaya V, Foteva VV, Natarajan KN, Baying B, Benes V, Patil KR, Teichmann SA, Lancrin C. (2018)

Single-cell transcriptomics identifies CD44 as a new marker and regulator of haematopoietic stem cells development.

bioRxiv 338178 doi: 10.1101/338178
doi

Bergiers I, Andrews T, Vargel Bölükbaşı Ö, Buness A, Janosz E, Lopez-Anguita N, Ganter K, Kosim K, Celen C, Itır Perçin G, Collier P, Baying B, Benes V, Hemberg M, Lancrin C. (2018)

Single-cell transcriptomics reveals a new dynamical function of transcription factors during embryonic hematopoiesis.

Elife 7 doi: 10.7554/eLife.29312
Europe PMC | doi


2015

Lin Q, Chauvistré H, Costa IG, Gusmao EG, Mitzka S, Hänzelmann S, Baying B, Klisch T, Moriggl R, Hennuy B, Smeets H, Hoffmann K, Benes V, Seré K, Zenke M. (2015)

Epigenetic program and transcription factor circuitry of dendritic cell development.

Nucleic Acids Res 43(20):9680-9693. doi: 10.1093/nar/gkv1056
Europe PMC | doi


2014

Pougach K, Voet A, Kondrashov FA, Voordeckers K, Christiaens JF, Baying B, Benes V, Sakai R, Aerts J, Zhu B, Van Dijck P, Verstrepen KJ. (2014)

Duplication of a promiscuous transcription factor drives the emergence of a new regulatory network

Nat Commun 5:4868. doi: 10.1038/ncomms5868
Europe PMC | doi

Vargel O, Zhang Y, Collier P, Baying B, Benes V, Lancrin C. (2014)

TGFβ pathway activation blocks the endothelial to hematopoietic transition.

Paper presented at the ISEH 43rd Annual Scientific Meeting, Montréal, Canada, 21-24 August 2014.Exp. Hematol. 42(8):S64. doi: 10.1016/j.exphem.2014.07.243
Europe PMC | doi


2013

Brennecke P, Anders S, Kim JK, Kołodziejczyk AA, Zhang X, Proserpio V, Baying B, Benes V, Teichmann SA, Marioni JC, Heisler MG. (2013)

Accounting for technical noise in single-cell RNA-seq experiments

Nat. Methods 10(11):1093-1095. doi: 10.1038/nmeth.2645
Europe PMC | doi

Frühmesser A, Blake J, Haberlandt E, Baying B, Raeder B, Runz H, Spreiz A, Fauth C, Benes V, Utermann G, Zschocke J, Kotzot D. (2013)

Disruption of EXOC6B in a patient with developmental delay, epilepsy, and a de novo balanced t(2;8) translocation

Eur. J. Hum. Genet. 21(10):1177-1180. doi: 10.1038/ejhg.2013.18
Europe PMC | doi