Publications
Total: 87 publication(s)
2018
Stolt-Bergner P, Benda C, Bergbrede T, Besir H, Celie PHN, Chang C, Drechsel D, Fischer A, Geerlof A, Giabbai B, van den Heuvel J, Huber G, Knecht W, Lehner A, Lemaitre R, Nordén K, Pardee G, Racke I, Remans K, Sander A, Scholz J, Stadnik M, Storici P, Weinbruch D, Zaror I, Lua LHL, Suppmann S. (2018)
Baculovirus-driven protein expression in insect cells: A benchmarking study.
J Struct Biol doi: 10.1016/j.jsb.2018.03.004
Europe PMC | doi
Chen PC, Masiewicz P, Rybin V, Svergun D, Hennig J. (2018)
A General Small-Angle X-ray Scattering-Based Screening Protocol Validated for Protein-RNA Interactions.
ACS Comb Sci 20(4) doi: 10.1021/acscombsci.8b00007
Europe PMC | doi
Martin P, Palhière I, Maroteau C, Bardou P, Canale-Tabet K, Sarry J, Woloszyn F, Bertrand-Michel J, Racke I, Besir H, Rupp R, Tosser-Klopp G. (2018)
Author Correction: A genome scan for milk production traits in dairy goats reveals two new mutations in Dgat1 reducing milk fat content.
Sci Rep. 8(1) doi: 10.1038/s41598-018-22118-x
Europe PMC | doi
Hennig BP, Velten L, Racke I, Szu Tu C, Thoms M, Rybin V, Besir H, Remans K, Steinmetz LM. (2018)
Large-Scale Low-Cost NGS Library Preparation Using a Robust Tn5 Purification and Tagmentation Protocol.
G3 (Bethesda) 8(1) doi: 10.1534/g3.117.300257
Europe PMC | doi
2017
Kschonsak M, Merkel F, Bisht S, Metz J, Rybin V, Hassler M, Haering CH. (2017)
Structural Basis for a Safety-Belt Mechanism That Anchors Condensin to Chromosomes.
Cell 171(3):588-600. doi: 10.1016/j.cell.2017.09.008
Europe PMC | doi
Schulz EC, Seiler M, Zuliani C, Voigt F, Rybin V, Pogenberg V, Mücke N, Wilmanns M, Gibson TJ, Barabas O.. (2017)
Intermolecular base stacking mediates RNA-RNA interaction in a crystal structure of the RNA chaperone Hfq
Sci Rep 7(1):9903. doi: 10.1038/s41598-017-10085-8
Europe PMC | doi
Martin P, Palhière I, Maroteau C, Bardou P, Canale-Tabet K, Sarry J, Woloszyn F, Bertrand-Michel J, Racke I, Besir H, Rupp R, Tosser-Klopp G. (2017)
A genome scan for milk production traits in dairy goats reveals two new mutations in Dgat1 reducing milk fat content.
Sci Rep 7(1872):1-13. doi: 10.1038/s41598-017-02052-0
Europe PMC | doi
Besir H. (2017)
A Generic Protocol for Purifying Disulfide-Bonded Domains and Random Protein Fragments Using Fusion Proteins with SUMO3 and Cleavage by SenP2 Protease.
Methods Mol. Biol. 1586:141-154. doi: 10.1007/978-1-4939-6887-9_9
Europe PMC | doi
2016
Miller TC, Simon B, Rybin V, Grötsch H, Curtet S, Khochbin S, Carlomagno T, Müller CW. (2016)
A bromodomain-DNA interaction facilitates acetylation-dependent bivalent nucleosome recognition by the BET protein BRDT
Nat Commun 7:13855. doi: 10.1038/ncomms13855
Europe PMC | doi
Koehler C, Sauter PF, Wawryszyn M, Girona GE, Gupta K, Landry JJ, Fritz MH, Radic K, Hoffmann JE, Chen ZA, Zou J, Tan PS, Galik B, Junttila S, Stolt-Bergner P, Pruneri G, Gyenesei A, Schultz C, Biskup MB, Besir H, Benes V, Rappsilber J, Jechlinger M, Korbel JO, Berger I, Braese S, Lemke EA. (2016)
Genetic code expansion for multiprotein complex engineering.
Nat. Methods 13(12) doi: 10.1038/nmeth.4032
Europe PMC | doi
Gerner L, Munack S, Temmerman K, Lawrence-Dærner A, Besir H, Wilmanns M, Jensen JK, Thiede B, Mills IG, Morth JP. (2016)
Using the fluorescent properties of STO-609 as a tool to assist structure-function analyses of recombinant CaMKK2
Biochem. Biophys. Res. Commun. 476(2):102-107. doi: 10.1016/j.bbrc.2016.05.045
Europe PMC | doi
Gerner L, Munack S, Temmerman K, Lawrence-Dörner AM, Besir H, Wilmanns M, Jensen JK, Thiede B, Mills IG, Morth JP. (2016)
Data for the co-expression and purification of human recombinant CaMKK2 in complex with calmodulin in Escherichia coli.
Data Brief 8:733-740. doi: 10.1016/j.dib.2016.06.033
Europe PMC | doi
Parret AH, Besir H, Meijers R. (2016)
Critical reflections on synthetic gene design for recombinant protein expression.
Curr. Opin. Struct. Biol. 38:155-162. doi: 10.1016/j.sbi.2016.07.004
Europe PMC | doi
2015
Vonkova I, Saliba AE, Deghou S, Anand K, Ceschia S, Doerks T, Galih A, Kugler KG, Maeda K, Rybin V, van Noort V, Ellenberg J, Bork P, Gavin AC. (2015)
Lipid Cooperativity as a General Membrane-Recruitment Principle for PH Domains.
Cell Rep 12(9):1519-1530. doi: 10.1016/j.celrep.2015.07.054
Europe PMC | doi
Bleckmann M, Fritz MHY, Bhuju S, Jarek M, Schurig M, Geffers R, Benes V, Besir H, van den Heuvel J. (2015)
Genomic Analysis and Isolation of RNA Polymerase II Dependent Promoters from Spodoptera frugiperda
PLoS One 10(8):e0132898. doi: 10.1371/journal.pone.0132898
Europe PMC | doi
Jeske M, Bordi M, Glatt S, Müller S, Rybin V, Müller CW, Ephrussi A. (2015)
The Crystal Structure of the Drosophila Germline Inducer Oskar Identifies Two Domains with Distinct Vasa Helicase- and RNA-Binding Activities.
Cell Rep 12(4):1-12. doi: 10.1016/j.celrep.2015.06.055
Europe PMC | doi
Skruzny M, Desfosses A, Prinz S, Dodonova SO, Gieras A, Uetrecht C, Jakobi AJ, Abella M, Hagen WJ, Schulz J, Meijers R, Rybin V, Briggs JA, Sachse C, Kaksonen M. (2015)
An Organized Co-assembly of Clathrin Adaptors Is Essential for Endocytosis.
Dev. Cell 33(2):150-162. doi: 10.1016/j.devcel.2015.02.023
Europe PMC | doi
Glatt S, Zabel R, Vonkova I, Kumar A, Netz DJ, Pierik AJ, Rybin V, Lill R, Gavin A, Balbach J, Breunig KD, Müller CW. (2015)
Structure of the Kti11/Kti13 Heterodimer and Its Double Role in Modifications of tRNA and Eukaryotic Elongation Factor 2.
Structure 23(1):149-160. doi: 10.1016/j.str.2014.11.008
Europe PMC | doi
2014
Bojar D, Martinez J, Santiago J, Rybin V, Bayliss R, Hothorn M. (2014)
Crystal structures of the phosphorylated BRI1 kinase domain and implications for brassinosteroid signal initiation.
Plant J. 78(1):31-43. doi: 10.1111/tpj.12445
Europe PMC | doi
2013
Costa SJ, Almeida A, Castro A, Domingues L, Besir H. (2013)
The novel Fh8 and H fusion partners for soluble protein expression in Escherichia coli: a comparison with the traditional gene fusion technology
Appl. Microbiol. Biotechnol. 97(15):6779-6791. doi: 10.1007/s00253-012-4559-1
Europe PMC | doi
Hondele M, Stuwe T, Hassler M, Halbach F, Bowman A, Zhang ET, Nijmeijer B, Kotthoff C, Rybin V, Amlacher S, Hurt E, Ladurner AG. (2013)
Structural basis of histone H2A-H2B recognition by the essential chaperone FACT
Nature 499(7456):111-114. doi: 10.1038/nature12242
Europe PMC | doi
Taylor NM, Glatt S, Hennrich ML, von Scheven G, Grötsch H, Fernández-Tornero C, Rybin V, Gavin AC, Kolb P, Müller CW. (2013)
Structural and functional characterization of a phosphatase domain within yeast general transcription factor IIIC
J. Biol. Chem. 288(21):15110-15120. doi: 10.1074/jbc.m112.427856
Europe PMC | doi
Jankevicius G, Hassler M, Golia B, Rybin V, Zacharias M, Timinszky G, Ladurner AG. (2013)
A family of macrodomain proteins reverses cellular mono-ADP-ribosylation
Nat. Struct. Mol. Biol. 20(4):508-514. doi: 10.1038/nsmb.2523
Europe PMC | doi
Scholz J, Besir H, Strasser C, Suppmann S. (2013)
A new method to customize protein expression vectors for fast, efficient and background free parallel cloning
BMC Biotechnol. 13:12. doi: 10.1186/1472-6750-13-12
Europe PMC | doi
Ventura E, Riondato M, Sambuceti G, Salis A, Damonte G, Cordazzo C, Besir H, Pistoia V, Zardi L. (2013)
Use of the uteroglobin platform for the expression of a bivalent antibody against oncofetal fibronectin in Escherichia coli
PLoS ONE 8(12):e82878. doi: 10.1371/journal.pone.0082878
Europe PMC | doi
2012
Zanier K, ould M'hamed ould Sidi A, Boulade-Ladame C, Rybin V, Chappelle A, Atkinson A, Kieffer B, Travé G. (2012)
Solution structure analysis of the HPV16 E6 oncoprotein reveals a self-association mechanism required for E6-mediated degradation of p53
Structure 20(4):604-617. doi: 10.1016/j.str.2012.02.001
Europe PMC | doi
Gjerstorff MF, Rösner HI, Pedersen CB, Greve KB, Schmidt S, Wilson KL, Mollenhauer J, Besir H, Poulsen FM, Møllegaard NE, Ditzel HJ. (2012)
GAGE cancer-germline antigens are recruited to the nuclear envelope by germ cell-less (GCL)
PLoS ONE 7(9):e45819. doi: 10.1371/journal.pone.0045819
Europe PMC | doi
Schlesner M, Miller A, Besir H, Aivaliotis M, Streif J, Scheffer B, Siedler F, Oesterhelt D. (2012)
The protein interaction network of a taxis signal transduction system in a halophilic archaeon
BMC Microbiol. 12:272. doi: 10.1186/1471-2180-12-272
Europe PMC | doi
van Noort V, Seebacher J, Bader S, Mohammed S, Vonkova I, Betts MJ, Kühner S, Kumar R, Maier T, O'Flaherty M, Rybin V, Schmeisky A, Yus E, Stülke J, Serrano L, Russell RB, Heck AJ, Bork P, Gavin AC. (2012)
Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium
Mol. Syst. Biol. 8:571. doi: 10.1038/msb.2012.4
Europe PMC | doi
2011
Bayer-Giraldi M, Weikusat I, Besir H, Dieckmann G. (2011)
Characterization of an antifreeze protein from the polar diatom Fragilariopsis cylindrus and its relevance in sea ice
Cryobiology 63(3):210-219. doi: 10.1016/j.cryobiol.2011.08.006
Europe PMC | doi
Duszczyk MM, Wutz A, Rybin V, Sattler M. (2011)
The Xist RNA A-repeat comprises a novel AUCG tetraloop fold and a platform for multimerization
RNA 17(11):1973-1982. doi: 10.1261/rna.2747411
Europe PMC | doi
Mackereth CD, Madl T, Bonnal S, Simon B, Zanier K, Gasch A, Rybin V, Valcárcel J, Sattler M. (2011)
Multi-domain conformational selection underlies pre-mRNA splicing regulation by U2AF
Nature 475(7356):408-411. doi: 10.1038/nature10171
Europe PMC | doi
Nowak AJ, Alfieri C, Stirnimann CU, Rybin V, Baudin F, Ly-Hartig N, Lindner D, Müller CW. (2011)
Chromatin-modifying complex component Nurf55/p55 associates with histones H3 and H4 and polycomb repressive complex 2 subunit Su(z)12 through partially overlapping binding sites
J. Biol. Chem. 286(26):23388-23396. doi: 10.1074/jbc.m110.207407
Europe PMC | doi
Langer K, Dian C, Rybin V, Müller CW, Petosa C. (2011)
Insights into the function of the CRM1 cofactor RanBP3 from the structure of its Ran-binding domain
PLoS ONE 6(2):e17011. doi: 10.1371/journal.pone.0017011
Europe PMC | doi
2010
Gallego O, Betts MJ, Gvozdenovic-Jeremic J, Maeda K, Matetzki C, Aguilar-Gurrieri C, Beltran-Alvarez P, Bonn S, Fernández-Tornero C, Jensen LJ, Kuhn M, Trott J, Rybin V, Müller CW, Bork P, Kaksonen M, Russell RB, Gavin AC. (2010)
A systematic screen for protein-lipid interactions in Saccharomyces cerevisiae
Mol. Syst. Biol. 6:430. doi: 10.1038/msb.2010.87
Europe PMC | doi
Gjerstorff MF, Besir H, Larsen MR, Ditzel HJ. (2010)
Expression, purification and characterization of the cancer-germline antigen GAGE12I: a candidate for cancer immunotherapy
Protein Expr. Purif. 73(2):217-222. doi: 10.1016/j.pep.2010.05.010
Europe PMC | doi
Hothorn M, Van den Ende W, Lammens W, Rybin V, Scheffzek K. (2010)
Structural insights into the pH-controlled targeting of plant cell-wall invertase by a specific inhibitor protein
Proc. Natl. Acad. Sci. U.S.A. 107(40):17427-17432. doi: 10.1073/pnas.1004481107
Europe PMC | doi
Wirtz M, Birke H, Heeg C, Müller C, Hosp F, Throm C, König S, Feldman-Salit A, Rippe K, Petersen G, Wade RC, Rybin V, Scheffzek K, Hell R. (2010)
Structure and function of the hetero-oligomeric cysteine synthase complex in plants
J. Biol. Chem. 285(43):32810-32817. doi: 10.1074/jbc.m110.157446
Europe PMC | doi
Schallus T, Fehér K, Sternberg U, Rybin V, Muhle-Goll C. (2010)
Analysis of the specific interactions between the lectin domain of malectin and diglucosides
Glycobiology 20(8):1010-1020. doi: 10.1093/glycob/cwq059
Europe PMC | doi
Stankiewicz M, Nikolay R, Rybin V, Mayer MP. (2010)
CHIP participates in protein triage decisions by preferentially ubiquitinating Hsp70-bound substrates
FEBS J. 277(16):3353-3367. doi: 10.1111/j.1742-4658.2010.07737.x
Europe PMC | doi
Eder M, Knackmuss S, Le Gall F, Reusch U, Rybin V, Little M, Haberkorn U, Mier W, Eisenhut M. (2010)
68Ga-labelled recombinant antibody variants for immuno-PET imaging of solid tumours
Eur. J. Nucl. Med. Mol. Imaging 37(7):1397-1407. doi: 10.1007/s00259-010-1392-6
Europe PMC | doi
Krzic U, Rybin V, Leonard KR, Linke WA, Bullard B. (2010)
Regulation of oscillatory contraction in insect flight muscle by troponin
J. Mol. Biol. 397(1):110-118. doi: 10.1016/j.jmb.2010.01.039
Europe PMC | doi
Zanier K, Ruhlmann C, Melin F, Masson M, Ould M'hamed Ould Sidi A, Bernard X, Fischer B, Brino L, Ristriani T, Rybin V, Baltzinger M, Vande Pol S, Hellwig P, Schultz P, Travé G. (2010)
E6 proteins from diverse papillomaviruses self-associate both in vitro and in vivo
J. Mol. Biol. 396(1):90-104. doi: 10.1016/j.jmb.2009.11.022
Europe PMC | doi
2009
Kühner S, van Noort V, Betts MJ, Leo-Macias A, Batisse C, Rode M, Yamada T, Maier T, Bader S, Beltran-Alvarez P, Castaño-Diez D, Chen WH, Devos D, Güell M, Norambuena T, Racke I, Rybin V, Schmidt A, Yus E, Aebersold R, Herrmann R, Böttcher B, Frangakis AS, Russell RB, Serrano L, Bork P, Gavin AC. (2009)
Proteome organization in a genome-reduced bacterium
Science 326(5957):1235-1240. doi: 10.1126/science.1176343
Europe PMC | doi
Van Doorslaer K, Sidi AO, Zanier K, Rybin V, Deryckère F, Rector A, Burk RD, Lienau EK, van Ranst M, Travé G. (2009)
Identification of unusual E6 and E7 proteins within avian papillomaviruses: cellular localization, biophysical characterization, and phylogenetic analysis
J. Virol. 83(17):8759-8770. doi: 10.1128/jvi.01777-08
Europe PMC | doi
Grimm C, Matos R, Ly-Hartig N, Steuerwald U, Lindner D, Rybin V, Müller J, Müller CW. (2009)
Molecular recognition of histone lysine methylation by the Polycomb group repressor dSfmbt
EMBO J. 28(13):1965-1977. doi: 10.1038/emboj.2009.147
Europe PMC | doi
McGillicuddy LT, Fromm JA, Hollstein PE, Kubek S, Beroukhim R, De Raedt T, Johnson BW, Williams SM, Nghiemphu P, Liau LM, Cloughesy TF, Mischel PS, Parret A, Seiler J, Moldenhauer G, Scheffzek K, Stemmer-Rachamimov AO, Sawyers CL, Brennan C, Messiaen L, Mellinghoff IK, Cichowski K. (2009)
Proteasomal and genetic inactivation of the NF1 tumor suppressor in gliomagenesis
Cancer Cell 16(1):44-54. doi: 10.1016/j.ccr.2009.05.009
Europe PMC | doi
Hothorn M, Neumann H, Lenherr ED, Wehner M, Rybin V, Hassa PO, Uttenweiler A, Reinhardt M, Schmidt A, Seiler J, Ladurner AG, Herrmann C, Scheffzek K, Mayer A. (2009)
Catalytic core of a membrane-associated eukaryotic polyphosphate polymerase
Science 324(5926):513-516. doi: 10.1126/science.1168120
Europe PMC | doi
Ami D, Natalello A, Schultz T, Gatti-Lafranconi P, Lotti M, Doglia SM, de Marco A. (2009)
Effects of recombinant protein misfolding and aggregation on bacterial membranes
Biochim. Biophys. Acta 1794(2):263-269. doi: 10.1016/j.bbapap.2008.10.015
Europe PMC | doi
Kuehnel MP, Rybin V, Anand PK, Anes E, Griffiths G. (2009)
Lipids regulate P2X7-receptor-dependent actin assembly by phagosomes via ADP translocation and ATP synthesis in the phagosome lumen
J. Cell. Sci. 122(Pt 4):499-504. doi: 10.1242/jcs.034199
Europe PMC | doi
Corsini L, Hothorn M, Stier G, Rybin V, Scheffzek K, Gibson TJ, Sattler M. (2009)
Dimerization and protein binding specificity of the U2AF homology motif of the splicing factor Puf60
J. Biol. Chem. 284(1):630-639. doi: 10.1074/jbc.m805395200
Europe PMC | doi
Lawrence AM, Besir HU. (2009)
Staining of proteins in gels with Coomassie G-250 without organic solvent and acetic acid
J Vis Exp (30):351-356. doi: 10.3791/1350
Europe PMC | doi
2008
Stuwe T, Hothorn M, Lejeune E, Rybin V, Bortfeld M, Scheffzek K, Ladurner AG. (2008)
The FACT Spt16 "peptidase" domain is a histone H3-H4 binding module
Proc. Natl. Acad. Sci. U.S.A. 105(26):8884-8889. doi: 10.1073/pnas.0712293105
Europe PMC | doi
Gromes R, Hothorn M, Lenherr ED, Rybin V, Scheffzek K, Rausch T. (2008)
The redox switch of gamma-glutamylcysteine ligase via a reversible monomer-dimer transition is a mechanism unique to plants
Plant J. 54(6):1063-1075. doi: 10.1111/j.1365-313x.2008.03477.x
Europe PMC | doi
Fiedler M, Sánchez-Barrena MJ, Nekrasov M, Mieszczanek J, Rybin V, Müller J, Evans P, Bienz M. (2008)
Decoding of methylated histone H3 tail by the Pygo-BCL9 Wnt signaling complex
Mol. Cell 30(4):507-518. doi: 10.1016/j.molcel.2008.03.011
Europe PMC | doi
Natalello A, Santarella R, Doglia SM, de Marco A. (2008)
Physical and chemical perturbations induce the formation of protein aggregates with different structural features
Protein Expr. Purif. 58(2):356-361. doi: 10.1016/j.pep.2007.12.002
Europe PMC | doi
Koyama S, Hata S, Witt CC, Ono Y, Lerche S, Ojima K, Chiba T, Doi N, Kitamura F, Tanaka K, Abe K, Witt SH, Rybin V, Gasch A, Franz T, Labeit S, Sorimachi H. (2008)
Muscle RING-finger protein-1 (MuRF1) as a connector of muscle energy metabolism and protein synthesis
J. Mol. Biol. 376(5):1224-1236. doi: 10.1016/j.jmb.2007.11.049
Europe PMC | doi
Denayer E, Parret A, Chmara M, Schubbert S, Vogels A, Devriendt K, Frijns JP, Rybin V, de Ravel TJ, Shannon K, Cools J, Scheffzek K, Legius E. (2008)
Mutation analysis in Costello syndrome: functional and structural characterization of the HRAS p.Lys117Arg mutation
Hum. Mutat. 29(2):232-239. doi: 10.1002/humu.20616
Europe PMC | doi
2007
Grimm C, de Ayala Alonso AG, Rybin V, Steuerwald U, Ly-Hartig N, Fischle W, Müller J, Müller CW. (2007)
Structural and functional analyses of methyl-lysine binding by the malignant brain tumour repeat protein Sex comb on midleg
EMBO Rep. 8(11):1031-1037. doi: 10.1038/sj.embor.7401085
Europe PMC | doi
Sjekloća L, Pudas R, Sjöblom B, Konarev P, Carugo O, Rybin V, Kiema TR, Svergun D, Ylänne J, Djinović Carugo K. (2007)
Crystal structure of human filamin C domain 23 and small angle scattering model for filamin C 23-24 dimer
J. Mol. Biol. 368(4):1011-1023. doi: 10.1016/j.jmb.2007.02.018
Europe PMC | doi
Oddone A, Lorentzen E, Basquin J, Gasch A, Rybin V, Conti E, Sattler M. (2007)
Structural and biochemical characterization of the yeast exosome component Rrp40
EMBO Rep. 8(1):63-69. doi: 10.1038/sj.embor.7400856
Europe PMC | doi
2006
Kalamidas SA, Kuehnel MP, Peyron P, Rybin V, Rauch S, Kotoulas OB, Houslay M, Hemmings BA, Gutierrez MG, Anes E, Griffiths G. (2006)
cAMP synthesis and degradation by phagosomes regulate actin assembly and fusion events: consequences for mycobacteria
J. Cell. Sci. 119(Pt 17):3686-3694. doi: 10.1242/jcs.03091
Europe PMC | doi
Boyault C, Gilquin B, Zhang Y, Rybin V, Garman E, Meyer-Klaucke W, Matthias P, Müller CW, Khochbin S. (2006)
HDAC6-p97/VCP controlled polyubiquitin chain turnover
EMBO J. 25(14):3357-3366. doi: 10.1038/sj.emboj.7601210
Europe PMC | doi
Pastore C, Adinolfi S, Huynen MA, Rybin V, Martin S, Mayer M, Bukau B, Pastore A. (2006)
YfhJ, a molecular adaptor in iron-sulfur cluster formation or a frataxin-like protein?
Structure 14(5):857-867. doi: 10.1016/j.str.2006.02.010
Europe PMC | doi
Gareus R, Di Nardo A, Rybin V, Witke W. (2006)
Mouse profilin 2 regulates endocytosis and competes with SH3 ligand binding to dynamin 1
J. Biol. Chem. 281(5):2803-2811. doi: 10.1074/jbc.m503528200
Europe PMC | doi
Schultz T, Martinez L, de Marco A. (2006)
The evaluation of the factors that cause aggregation during recombinant expression in E. coli is simplified by the employment of an aggregation-sensitive reporter
Microb. Cell Fact. 5:28. doi: 10.1186/1475-2859-5-28
Europe PMC | doi
2005
Odintsov SG, Sabała I, Bourenkov G, Rybin V, Bochtler M. (2005)
Substrate access to the active sites in aminopeptidase T, a representative of a new metallopeptidase clan
J. Mol. Biol. 354(2):403-412. doi: 10.1016/j.jmb.2005.09.042
Europe PMC | doi
Franz C, Askjaer P, Antonin W, Iglesias CL, Haselmann U, Schelder M, de Marco A, Wilm M, Antony C, Mattaj IW. (2005)
Nup155 regulates nuclear envelope and nuclear pore complex formation in nematodes and vertebrates
EMBO J. 24(20):3519-3531. doi: 10.1038/sj.emboj.7600825
Europe PMC | doi
Odintsov SG, Sabała I, Bourenkov G, Rybin V, Bochtler M. (2005)
Staphylococcus aureus aminopeptidase S is a founding member of a new peptidase clan
J. Biol. Chem. 280(30):27792-27799. doi: 10.1074/jbc.m502023200
Europe PMC | doi
de Marco A, Vigh L, Diamant S, Goloubinoff P. (2005)
Native folding of aggregation-prone recombinant proteins in Escherichia coli by osmolytes, plasmid- or benzyl alcohol-overexpressed molecular chaperones
Cell Stress Chaperones 10(4):329-339. doi: 10.1379/CSC-139R.1
Europe PMC | doi
Dümmler A, Lawrence AM, de Marco A. (2005)
Simplified screening for the detection of soluble fusion constructs expressed in E. coli using a modular set of vectors
Microb. Cell Fact. 4:34. doi: 10.1186/1475-2859-4-34
Europe PMC | doi
2004
De Marco V, Stier G, Blandin S, de Marco A. (2004)
The solubility and stability of recombinant proteins are increased by their fusion to NusA
Biochem. Biophys. Res. Commun. 322(3):766-771. doi: 10.1016/j.bbrc.2004.07.189
Europe PMC | doi
de Marco A, Casatta E, Savaresi S, Geerlof A. (2004)
Recombinant proteins fused to thermostable partners can be purified by heat incubation
J. Biotechnol. 107(2):125-133. doi: 10.1016/j.jbiotec.2003.10.008
Europe PMC | doi
2002
Reina J, Lacroix E, Hobson SD, Fernandez-Ballester G, Rybin V, Schwab MS, Serrano L, Gonzalez C. (2002)
Computer-aided design of a PDZ domain to recognize new target sequences
Nat. Struct. Biol. 9(8):621-627. doi: 10.1038/nsb815
Europe PMC | doi
Defacque H, Bos E, Garvalov B, Barret C, Roy C, Mangeat P, Shin HW, Rybin V, Griffiths G. (2002)
Phosphoinositides regulate membrane-dependent actin assembly by latex bead phagosomes
Mol. Biol. Cell 13(4):1190-1202. doi: 10.1091/mbc.01-06-0314
Europe PMC | doi
Gavin AC, Bösche M, Krause R, Grandi P, Marzioch M, Bauer A, Schultz J, Rick JM, Michon AM, Cruciat CM, Remor M, Höfert C, Schelder M, Brajenovic M, Ruffner H, Merino A, Klein K, Hudak M, Dickson D, Rudi T, Gnau V, Bauch A, Bastuck S, Huhse B, Leutwein C, Heurtier MA, Copley RR, Edelmann A, Querfurth E, Rybin V, Drewes G, Raida M, Bouwmeester T, Bork P, Seraphin B, Kuster B, Neubauer G, Superti-Furga G. (2002)
Functional organization of the yeast proteome by systematic analysis of protein complexes
Nature 415(6868):141-147. doi: 10.1038/415141a
Europe PMC | doi
2001
Lippé R, Miaczynska M, Rybin V, Runge A, Zerial M. (2001)
Functional synergy between Rab5 effector Rabaptin-5 and exchange factor Rabex-5 when physically associated in a complex
Mol. Biol. Cell 12(7):2219-2228. doi: 10.1091/mbc.12.7.2219
Europe PMC | doi
Esters H, Alexandrov K, Iakovenko A, Ivanova T, Thomä N, Rybin V, Zerial M, Scheidig AJ, Goody RS. (2001)
Vps9, Rabex-5 and DSS4: proteins with weak but distinct nucleotide-exchange activities for Rab proteins
J. Mol. Biol. 310(1):141-156. doi: 10.1006/jmbi.2001.4735
Europe PMC | doi
Jahraus A, Egeberg M, Hinner B, Habermann A, Sackman E, Pralle A, Faulstich H, Rybin V, Defacque H, Griffiths G. (2001)
ATP-dependent membrane assembly of F-actin facilitates membrane fusion
Mol. Biol. Cell 12(1):155-170. doi: 10.1091/mbc.12.1.155
Europe PMC | doi
2000
Lanzetti L, Rybin V, Malabarba MG, Christoforidis S, Scita G, Zerial M, Di Fiore PP. (2000)
The Eps8 protein coordinates EGF receptor signalling through Rac and trafficking through Rab5
Nature 408(6810):374-377. doi: 10.1038/35042605
Europe PMC | doi
McCarthy AA, Haebel PW, Törrönen A, Rybin V, Baker EN, Metcalf P. (2000)
Crystal structure of the protein disulfide bond isomerase, DsbC, from Escherichia coli
Nat. Struct. Biol. 7(3):196-199. doi: 10.1038/73295
Europe PMC | doi
1999
McBride HM, Rybin V, Murphy C, Giner A, Teasdale R, Zerial M. (1999)
Oligomeric complexes link Rab5 effectors with NSF and drive membrane fusion via interactions between EEA1 and syntaxin 13
Cell 98(3):377-386. doi: 10.1016/s0092-8674(00)81966-2
Europe PMC | doi
1998
Gournier H, Stenmark H, Rybin V, Lippé R, Zerial M. (1998)
Two distinct effectors of the small GTPase Rab5 cooperate in endocytic membrane fusion
EMBO J. 17(7):1930-1940. doi: 10.1093/emboj/17.7.1930
Europe PMC | doi
Vitale G, Rybin V, Christoforidis S, Thornqvist P, McCaffrey M, Stenmark H, Zerial M. (1998)
Distinct Rab-binding domains mediate the interaction of Rabaptin-5 with GTP-bound Rab4 and Rab5
EMBO J. 17(7):1941-1951. doi: 10.1093/emboj/17.7.1941
Europe PMC | doi
1997
Horiuchi H, Lippé R, McBride HM, Rubino M, Woodman P, Stenmark H, Rybin V, Wilm M, Ashman K, Mann M, Zerial M. (1997)
A novel Rab5 GDP/GTP exchange factor complexed to Rabaptin-5 links nucleotide exchange to effector recruitment and function
Cell 90(6):1149-1159. doi: 10.1016/s0092-8674(00)80380-3
Europe PMC | doi
1996
Murphy C, Saffrich R, Grummt M, Gournier H, Rybin V, Rubino M, Auvinen P, Lütcke A, Parton RG, Zerial M. (1996)
Endosome dynamics regulated by a Rho protein
Nature 384(6608):427-432. doi: 10.1038/384427a0
Europe PMC | doi
Rybin V, Ullrich O, Rubino M, Alexandrov K, Simon I, Seabra MC, Goody R, Zerial M. (1996)
GTPase activity of Rab5 acts as a timer for endocytic membrane fusion
Nature 383(6597):266-269. doi: 10.1038/383266a0
Europe PMC | doi