Publications

Total: 46 publication(s)

2016

Reichel M, Liao Y, Rettel M, Ragan C, Evers M, Alleaume AM, Horos R, Hentze MW, Preiss T, Millar AA. (2016)

In planta determination of the mRNA-binding proteome of Arabidopsis etiolated seedlings.

Plant Cell doi: 10.1105/tpc.16.00562
Europe PMC | doi

Milewski MC, Broger T, Kirkpatrick J, Filomena A, Komadina D, Schneiderhan-Marra N, Wilmanns M, Parret AH. (2016)

A standardized production pipeline for high profile targets from Mycobacterium tuberculosis.

Proteomics Clin Appl doi: 10.1002/prca.201600033
Europe PMC | doi

Castello A, Fischer B, Frese CK, Horos R, Alleaume AM, Foehr S, Curk T, Krijgsveld J, Hentze MW. (2016)

Comprehensive Identification of RNA-Binding Domains in Human Cells.

MOL CELL 63(4):696-710. doi: 10.1016/j.molcel.2016.06.029
Europe PMC | doi

Schur FK, Obr M, Hagen WJ, Wan W, Jakobi AJ, Kirkpatrick JM, Sachse C, Kräusslich HG, Briggs JA. (2016)

An atomic model of HIV-1 capsid-SP1 reveals structures regulating assembly and maturation.

Science 353(6298):506-508. doi: 10.1126/science.aaf9620
Europe PMC | doi

Sysoev VO, Fischer B, Frese CK, Gupta I, Krijgsveld J, Hentze MW, Castello A, Ephrussi A. (2016)

Global changes of the RNA-bound proteome during the maternal-to-zygotic transition in Drosophila.

Nat Commun 7:12128. doi: 10.1038/ncomms12128
Europe PMC | doi

Liepelt A, Naarmann-de Vries IS, Simons N, Eichelbaum K, Foehr S, Archer SK, Castello A, Usadel B, Krijgsveld J, Preiss T, Marx G, Hentze MW, Ostareck DH, Ostareck-Lederer A. (2016)

Identification of RNA-binding proteins in macrophages by interactome capture.

Mol. Cell Proteomics doi: 10.1074/mcp.M115.056564
Europe PMC | doi

Virant-Klun I, Leicht S, Hughes C, Krijgsveld J. (2016)

Identification of maturation-specific proteins by single-cell proteomics of human oocytes.

Mol. Cell Proteomics (15):2616-2627. doi: 10.1074/mcp.M115.056887
Europe PMC | doi

Farci D, Collu G, Kirkpatrick J, Esposito F, Piano D. (2016)

RhVI1 is a membrane-anchored vacuolar invertase highly expressed in Rosa hybrida L. petals.

J. Exp. Bot. doi: 10.1093/jxb/erw148
Europe PMC | doi

Sieber J, Hauer C, Bhuvanagiri M, Leicht S, Krijgsveld J, Neu-Yilik G, Hentze MW, Kulozik AE. (2016)

Proteomic analysis reveals branch-specific regulation of the unfolded protein response by nonsense-mediated mRNA decay.

Mol. Cell Proteomics
Europe PMC

Vargel O, Zhang Y, Kosim K, Ganter K, Foehr S, Mardenborough Y, Shvartsman M, Enright AJ, Krijgsveld J, Lancrin C. (2016)

Activation of the TGF beta pathway impairs endothelial to haematopoietic transition

SCI REP-UK 6 doi: 10.1038/srep21518
doi


2015

Dunne M, Leicht S, Krichel B, Mertens HD, Thompson A, Krijgsveld J, Svergun DI, Gómez-Torres N, Garde S, Uetrecht C, Narbad A, Mayer MJ, Meijers R. (2015)

Crystal structure of the CTP1L endolysin reveals how its activity is regulated by a secondary translation product.

J. Biol. Chem. doi: 10.1074/jbc.M115.671172
Europe PMC | doi

Haniewicz P, Floris D, Farci D, Kirkpatrick J, Loi MC, Büchel C, Bochtler M, Piano D. (2015)

Isolation of Plant Photosystem II Complexes by Fractional Solubilization.

Front Plant Sci 6 doi: 10.3389/fpls.2015.01100
Europe PMC | doi

Beckmann BM, Horos R, Fischer B, Castello A, Eichelbaum K, Alleaume AM, Schwarzl T, Curk T, Foehr S, Huber W, Krijgsveld J, Hentze MW. (2015)

The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs.

Nat Commun 6 doi: 10.1038/ncomms10127
Europe PMC | doi

Schäfer M, Oeing CU, Rohm M, Baysal-Temel E, Lehmann LH, Bauer R, Volz HC, Boutros M, Sohn D, Sticht C, Gretz N, Eichelbaum K, Werner T, Hirt MN, Eschenhagen T, Müller-Decker K, Strobel O, Hackert T, Krijgsveld J, Katus HA, Berriel Diaz M, Backs J, Herzig S. (2015)

Ataxin-10 is part of a cachexokine cocktail triggering cardiac metabolic dysfunction in cancer cachexia.

Mol Metab 5(2):67-78. doi: 10.1016/j.molmet.2015.11.004
Europe PMC | doi

Barra MM, Richards DM, Hansson J, Hofer AC, Delacher M, Hettinger J, Krijgsveld J, Feuerer M. (2015)

Transcription Factor 7 Limits Regulatory T Cell Generation in the Thymus.

J Immunol 195(7):3058-3070. doi: 10.4049/jimmunol.1500821
Europe PMC | doi

Haas S, Hansson J, Klimmeck D, Loeffler D, Velten L, Uckelmann H, Wurzer S, Prendergast ÁM, Schnell A, Hexel K, Santarella-Mellwig R, Blaszkiewicz S, Kuck A, Geiger H, Milsom MD, Steinmetz LM, Schroeder T, Trumpp A, Krijgsveld J, Essers MA. (2015)

Inflammation-Induced Emergency Megakaryopoiesis Driven by Hematopoietic Stem Cell-like Megakaryocyte Progenitors.

Cell Stem Cell 17(4):422-434. doi: 10.1016/j.stem.2015.07.007
Europe PMC | doi


2014

Bhuvanagiri M, Lewis J, Putzker K, Becker JP, Leicht S, Krijgsveld J, Batra R, Turnwald B, Jovanovic B, Hauer C, Sieber J, Hentze MW, Kulozik AE. (2014)

5-azacytidine inhibits nonsense-mediated decay in a MYC-dependent fashion.

EMBO Mol Med 6(12):1509-1639. doi: 10.15252/emmm.201404461
Europe PMC | doi

Bock T, Chen WH, Ori A, Malik N, Silva-Martin N, Huerta-Cepas J, Powell ST, Kastritis PL, Smyshlyaev G, Vonkova I, Kirkpatrick J, Doerks T, Nesme L, Baßler J, Kos M, Hurt E, Carlomagno T, Gavin AC, Barabas O, Müller CW, van Noort V, Beck M, Bork P. (2014)

An integrated approach for genome annotation of the eukaryotic thermophile Chaetomium thermophilum.

Nucleic Acids Res. 42(22):13525-13533. doi: 10.1093/nar/gku1147
Europe PMC | doi

Kronja I, Whitfield ZJ, Yuan B, Dzeyk K, Kirkpatrick J, Krijgsveld J, Orr-Weaver TL. (2014)

Quantitative proteomics reveals the dynamics of protein changes during Drosophila oocyte maturation and the oocyte-to-embryo transition.

Proc. Natl. Acad. Sci. U.S.A. 111(45):16023-16028. doi: 10.1073/pnas.1418657111
Europe PMC | doi

Haas S, Hansson J, Klimmeck D, Loffler D, Velten L, Uckelmann H, Wurzer S, Prendergast A, Schroeder T, Trumpp A, Krijgsveld J, Essers M. (2014)

Inflammation-driven fast-track differentiation of HSCs into the megakaryocytic lineage

EXP HEMATOL 42(8):S14. doi: 10.1016/j.exphem.2014.07.047
doi

Pavic K, Rios P, Dzeyk K, Koehler C, Lemke EA, Köhn M. (2014)

Unnatural Amino Acid Mutagenesis Reveals Dimerization As a Negative Regulatory Mechanism of VHR's Phosphatase Activity

ACS Chem. Biol. 9(7):1451-1459. doi: 10.1021/cb500240n
Europe PMC | doi

Kronja I, Yuan B, Eichhorn SW, Dzeyk K, Krijgsveld J, Bartel DP, Orr-Weaver TL. (2014)

Widespread Changes in the Posttranscriptional Landscape at the Drosophila Oocyte-to-Embryo Transition

Cell Rep 7(5):1495-1508. doi: 10.1016/j.celrep.2014.05.002
Europe PMC | doi

Farci D, Bowler MW, Kirkpatrick J, McSweeney S, Tramontano E, Piano D. (2014)

New features of the cell wall of the radio-resistant bacterium Deinococcus radiodurans

Biochim. Biophys. Acta 1838(7):1978-1984. doi: 10.1016/j.bbamem.2014.02.014
Europe PMC | doi

Polonio-Vallon T, Kirkpatrick J, Krijgsveld J, Hofmann TG. (2014)

Src kinase modulates the apoptotic p53 pathway by altering HIPK2 localization

Cell Cycle 13(1):115-125. doi: 10.4161/cc.26857
Europe PMC | doi

Virant-Klun I, Krijgsveld J. (2014)

Proteomes of animal oocytes: what can we learn for human oocytes in the in vitro fertilization programme?

Biomed Res Int 2014:856907. doi: 10.1155/2014/856907
Europe PMC | doi


2013

Dastidar EG, Dzeyk K, Krijgsveld J, Malmquist NA, Doerig C, Scherf A, Lopez-Rubio JJ. (2013)

Comprehensive histone phosphorylation analysis and identification of Pf14-3-3 protein as a histone H3 phosphorylation reader in malaria parasites

PLoS ONE 8(1):e53179. doi: 10.1371/journal.pone.0053179
Europe PMC | doi

Kakkola L, Denisova OV, Tynell J, Viiliäinen J, Ysenbaert T, Matos RC, Nagaraj A, Ohman T, Kuivanen S, Paavilainen H, Feng L, Yadav B, Julkunen I, Vapalahti O, Hukkanen V, Stenman J, Aittokallio T, Verschuren EW, Ojala PM, Nyman T, Saelens X, Dzeyk K, Kainov DE. (2013)

Anticancer compound ABT-263 accelerates apoptosis in virus-infected cells and imbalances cytokine production and lowers survival rates of infected mice

Cell Death Dis 4:e742. doi: 10.1038/cddis.2013.267
Europe PMC | doi


2012

Hughes C, Krijgsveld J. (2012)

Developments in quantitative mass spectrometry for the analysis of proteome dynamics

Trends Biotechnol. 30(12):668-676. doi: 10.1016/j.tibtech.2012.09.007
Europe PMC | doi

Teran LM, Rüggeberg S, Santiago J, Fuentes-Arenas F, Hernández JL, Montes-Vizuet AR, Xinping L, Franz T. (2012)

Immune response to seasonal influenza A virus infection: a proteomic approach

Arch. Med. Res. 43(6):464-469. doi: 10.1016/j.arcmed.2012.08.008
Europe PMC | doi

Feldmeyer N, Wabnitz G, Leicht S, Luckner-Minden C, Schiller M, Franz T, Conradi R, Kropf P, Müller I, Ho AD, Samstag Y, Munder M. (2012)

Arginine deficiency leads to impaired cofilin dephosphorylation in activated human T lymphocytes

Int. Immunol. 24(5):303-313. doi: 10.1093/intimm/dxs004
Europe PMC | doi

Gouw JW, Krijgsveld J. (2012)

MSQuant: a platform for stable isotope-based quantitative proteomics

Methods Mol. Biol. 893:511-522. doi: 10.1007/978-1-61779-885-6_31
Europe PMC | doi


2011

Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MK, Bauer DJ, Cáceres CE, Carmel L, Casola C, Choi JH, Detter JC, Dong Q, Dusheyko S, Eads BD, Fröhlich T, Geiler-Samerotte KA, Gerlach D, Hatcher P, Jogdeo S, Krijgsveld J, Kriventseva EV, Kültz D, Laforsch C, Lindquist E, Lopez J, Manak JR, Muller J, Pangilinan J, Patwardhan RP, Pitluck S, Pritham EJ, Rechtsteiner A, Rho M, Rogozin IB, Sakarya O, Salamov A, Schaack S, Shapiro H, Shiga Y, Skalitzky C, Smith Z, Souvorov A, Sung W, Tang Z, Tsuchiya D, Tu H, Vos H, Wang M, Wolf YI, Yamagata H, Yamada T, Ye Y, Shaw JR, Andrews J, Crease TJ, Tang H, Lucas SM, Robertson HM, Bork P, Koonin EV, Zdobnov EM, Grigoriev IV, Lynch M, Boore JL. (2011)

The ecoresponsive genome of Daphnia pulex

Science 331(6017):555-561. doi: 10.1126/science.1197761
Europe PMC | doi

Gouw JW, Tops BB, Krijgsveld J. (2011)

Metabolic labeling of model organisms using heavy nitrogen (15N)

Methods Mol. Biol. 753:29-42. doi: 10.1007/978-1-61779-148-2_2
Europe PMC | doi


2010

Pampaloni F, Stelzer EH, Leicht S, Marcello M. (2010)

Madin-Darby canine kidney cells are increased in aerobic glycolysis when cultured on flat and stiff collagen-coated surfaces rather than in physiological 3-D cultures

Proteomics 10(19):3394-3413. doi: 10.1002/pmic.201000236
Europe PMC | doi

Bieling P, Kronja I, Surrey T. (2010)

Microtubule motility on reconstituted meiotic chromatin

Curr. Biol. 20(8):763-769. doi: 10.1016/j.cub.2010.02.067
Europe PMC | doi


2009

Pekova S, Ivanek R, Dvorak M, Rueggeberg S, Leicht S, Li X, Franz T, Kozak T, Vrba J, Koza V, Karas M, Schwarz J, Cetkovsky P, Prucha M. (2009)

Molecular variability of FLT3/ITD mutants and their impact on the differentiation program of 32D cells: implications for the biological properties of AML blasts

Leuk. Res. 33(10):1409-1416. doi: 10.1016/j.leukres.2009.01.004
Europe PMC | doi

Kronja I, Kruljac-Letunic A, Caudron-Herger M, Bieling P, Karsenti E. (2009)

XMAP215-EB1 interaction is required for proper spindle assembly and chromosome segregation in Xenopus egg extract

Mol. Biol. Cell 20(11):2684-2696. doi: 10.1091/mbc.e08-10-1051
Europe PMC | doi

Reuter M, Chuma S, Tanaka T, Franz T, Stark A, Pillai RS. (2009)

Loss of the Mili-interacting Tudor domain-containing protein-1 activates transposons and alters the Mili-associated small RNA profile

Nat. Struct. Mol. Biol. 16(6):639-646. doi: 10.1038/nsmb.1615
Europe PMC | doi


2008

Reber S, Over S, Kronja I, Gruss OJ. (2008)

CaM kinase II initiates meiotic spindle depolymerization independently of APC/C activation

J. Cell Biol. 183(6):1007-1017. doi: 10.1083/jcb.200807006
Europe PMC | doi

Koyama S, Hata S, Witt CC, Ono Y, Lerche S, Ojima K, Chiba T, Doi N, Kitamura F, Tanaka K, Abe K, Witt SH, Rybin V, Gasch A, Franz T, Labeit S, Sorimachi H. (2008)

Muscle RING-finger protein-1 (MuRF1) as a connector of muscle energy metabolism and protein synthesis

J. Mol. Biol. 376(5):1224-1236. doi: 10.1016/j.jmb.2007.11.049
Europe PMC | doi


2007

Niethammer P, Kronja I, Kandels-Lewis S, Rybina S, Bastiaens P, Karsenti E. (2007)

Discrete states of a protein interaction network govern interphase and mitotic microtubule dynamics

PLoS Biol. 5(2):e29. doi: 10.1371/journal.pbio.0050029
Europe PMC | doi


2005

Li X, Wilm M, Franz T. (2005)

Silicone/graphite coating for on-target desalting and improved peptide mapping performance of matrix-assisted laser desorption/ionization-mass spectrometry targets in proteomic experiments

Proteomics 5(6):1460-1471. doi: 10.1002/pmic.200401023
Europe PMC | doi

Funk J, Li X, Franz T. (2005)

Threshold values for detergents in protein and peptide samples for mass spectrometry

Rapid Commun. Mass Spectrom. 19(20):2986-2988. doi: 10.1002/rcm.2142
Europe PMC | doi


2004

Schilling O, Rüggeberg S, Vogel A, Rittner N, Weichert S, Schmidt S, Doig S, Franz T, Benes V, Andrews SC, Baum M, Meyer-Klaucke W. (2004)

Characterization of an Escherichia coli elaC deletion mutant

Biochem. Biophys. Res. Commun. 320(4):1365-1373. doi: 10.1016/j.bbrc.2004.05.227
Europe PMC | doi

Sola M, Bavro VN, Timmins J, Franz T, Ricard-Blum S, Schoehn G, Ruigrok RW, Paarmann I, Saiyed T, O'Sullivan GA, Schmitt B, Betz H, Weissenhorn W. (2004)

Structural basis of dynamic glycine receptor clustering by gephyrin

EMBO J. 23(13):2510-2519. doi: 10.1038/sj.emboj.7600256
Europe PMC | doi


2003

Mavrakis M, Iseni F, Mazza C, Schoehn G, Ebel C, Gentzel M, Franz T, Ruigrok RW. (2003)

Isolation and characterisation of the rabies virus N degrees-P complex produced in insect cells

Virology 305(2):406-414. doi: 10.1006/viro.2002.1748
Europe PMC | doi