Location & dates EMBL Heidelberg, Germany 6 - 9 Jun 2017
Deadlines Application closed Abstract submission closed

Programme

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Day 1 - Tuesday 6 June 2017
TimeSpeaker

09.00 - 10.00

Arrival & Welcome
R pills theory and practice 

Marco Beccuti
10.00 - 11.00

Tips and tricks on RNAseq
Vladimir Benes

11.00 - 11.30

Coffee break

11.30 - 12.30 Tips and tricks on RNAseq
Vladimir Benes
12.30 - 13.30

Lunch

13.30 - 14.30 BaseSpace environment: Data structure, data upload, QC. Raffaele Calogero
Docker container: What is it? Marco Beccuti
Upload data, QC in docker containers Raffaele Calogero
14.30 - 15.30

Counting reads in BaseSpace
Raffaele Calogero

15.30 - 16.00

Coffee Break

16.00 - 17.00

Counting reads 
using docker containers
Raffaele Calogero

17.00 - 18.00

R pills theory and practice
Marco Beccuti

18.15 -19.15

Dinner at EMBL Canteen

19.15

Shuttle bus to ISG Hotel

Day 2 - Wednesday 7 June 2017
TimeSpeaker
09.00 - 10.00

R pills theory and practice
Marco Beccuti

10.00 - 11.00

Differential expression analysis in BaseSpace
Raffaele Calogero

11.00 - 11.30

Coffee Break

11.30 - 12.30 Differential expression analysis and batch effect correction using docker containers
Raffaele Calogero
12.30 - 13.30 Lunch
13.30 - 14.30

GO enrichment and GSEA analysis
Raffaele Calogero

14.30 - 15.30

Exercises

15.30 - 16:30 Data visualization, data reduction and clustering
Raffaele Calogero
16.30 - 17.00

Coffee Break

17.00 - 18.00

R pills theory and practice
Marco Beccuti

18.00 -19.00

Dinner at EMBL Canteen

19.00

Shuttle bus to ISG Hotel

Day 3 - Thursday 8 June 2017
TimeSpeaker

09.00 -10.00

R pills theory and practice
Marco Beccuti
10.00 - 11.00

Isoforms/exons differential expression
Raffaele Calogero

11.00 - 11.30

Coffee break

11.30 - 12.30 Isoforms/exons differential expression, understanding results
Raffaele Calogero
12.30 - 13.30

Lunch

13.30 - 14.30 miRNA differential expression analysis
Raffaele Calogero
14.30 - 16.30

Single cells RNAseq workflow
Raffaele Calogero

16.30 - 17.00

Coffee Break

17.00 - 18.00

R pills theory and practice
Marco Beccuti

18.00

Shuttle bus to downtown

18.30

Dinner downtown

Day 4 - Friday 9 June 2017
TimeSpeaker
09.00 - 11.00

R & bioconductor
Marco Beccuti, Raffaele Calogero

11.00 - 11.30

Coffee Break

11.30 - 12.30

Bioconductor RNAseq workflow 
Raffaele Calogero

12.30 - 13.30 Lunch break
13.30 - 15.00 Excercises
15.00 - 15.30

Coffee Break

16.00 - 17.00

Round table & final remarks
Vladimir Benes, Raffaele Calogero, Marco Beccuti

17.00 Shuttle bus to Main Station