Location & dates EMBL Heidelberg, Germany 4 - 8 Jun 2018
Deadlines Application closed

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Programme

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Day 1 - Monday 4 June 2018
TimeSpeakerLocation
14.00 - 14.30

Arrival & Welcome

Helix Seminar Room B

14.30 - 16.30

Tips and tricks on RNAseq
Vladimir Benes

Helix Seminar Room B
16.30 - 17.00

Coffee Break

Foyer

17.00 - 18.00

Tips and tricks on RNAseq
Vladimir Benes

Helix Seminar Room B

18.00 -19.00

Dinner at EMBL Canteen

EMBL Canteen

19.00

Shuttle bus to ISG Hotel

Day 2 - Tuesday 5 June 2018
TimeSpeakerLocation
09.00 - 10.00

R pills theory and practice
Marco Beccuti

Computer Training Lab

10.00 - 11.00

Experimental design. Raffaele Calogero
Docker4seq/4SeqGUI overview Raffaele Calogero

Computer Training Lab

11.00 - 11.30

Coffee Break

Foyer

11.30 - 12.30

Docker container: What is it? 
Marco Beccuti

Computer Training Lab

12.30 - 13.30

Lunch

EMBL Canteen

13.30 - 15.30

Counting reads 
using docker containers
Raffaele Calogero

Computer Training Lab
15.30 – 16.30

Exercises

Computer Training Lab
16.30 - 17.00

Coffee Break

Foyer

17.00 - 18.00

R pills theory and practice
Marco Beccuti

Computer Training Lab

18.00 -19.00

Dinner

EMBL Canteen

19.00

Shuttle bus to ISG Hotel

Day 3 - Wednesday 6 June 2018
TimeSpeakerLocation
10.00 - 11.00

Differential expression analysis
Raffaele Calogero

Computer Training Lab

11.00 - 11.30

Coffee Break

Computer Training Lab

11.30 - 12.30

Differential expression analysis and batch effect
correction using docker containers
Raffaele Calogero

Computer Training Lab

12.30 - 13.30

Lunch

EMBL Canteen

13.30 - 14.30

GO enrichment and GSEA analysis
Francesca Cordero

Computer Training Lab

14.30 - 15.30

Exercises

Computer Training Lab
15.30 - 16:30

Data visualization and clustering
Francesca Cordero

Computer Training Lab
16.30 - 17.00

Coffee Break

Foyer
17.00 - 18.00

R pills theory and practice
Marco Beccuti

Computer Training Lab

18.00 -19.00

Dinner

EMBL Canteen

19.00

Shuttle bus to ISG Hotel

Day 4 - Thursday 7 June 2018
TimeSpeakerLocation
09.00 -10.00

R pills theory and practice
Marco Beccuti

Computer Training Lab

10.00 - 11.00

Isoforms differential expression
Raffaele Calogero

Computer Training Lab

11.00 - 11.30

Coffee break

Foyer

11.30 - 12.30

Isoforms differential expression exercises 

Raffaele Calogero

Computer Training Lab

12.30 - 13.30

Lunch

EMBL Canteen

13.30 - 15.00

miRNA differential expression analysis
Raffaele Calogero

Computer Training Lab
15.00 - 16.30

Integrating miRNA data and gene level differential expression
Francesca Cordero

Computer Training Lab

16.30 - 17.00

Coffee Break

Foyer

17.00 - 17.30

R pills theory and practice
Marco Beccuti

Computer Training Lab

17.30

Shuttle bus to downtown

19.00

Dinner downtown

Heidelberg downtown
Day 5 - Friday 8 June 2018
TimeSpeakerLocation
09.00 - 11.00

Single cells RNAseq workflow
Raffaele Calogero

Computer Training Lab

11.00 - 11.30

Coffee Break

Foyer

11.30 - 12.30

Single cells RNAseq workflow
Raffaele Calogero

Computer Training Lab

12.30 - 13.30

Lunch

EMBL Canteen

13.30 - 15.00

Exercises

Computer Training Lab

15.00 - 15.30

Coffee Break

Foyer
16.00 - 17.00

Round table & final remarks
Vladimir Benes, Raffaele Calogero, Marco Beccuti

Computer Training Lab

17.00

Shuttle bus to Main Station

EMBL-Main Station