Programme
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| Time | Speaker |
|---|---|
| 11:00 - 12:45 | Arrival and registration |
| 12:45 - 13:00 | Welcome and opening remarks |
| 13:00 - 13:45 |
ImageJ |
| 13:45-15:00 |
Session 1 - Light microscopy 1 |
| 13:45-14:15 | Using morphological profiling to extract the most from your images Beth Cimini - Broad Institute, USA |
| 14:15-14:45 | Title TBC Jeremy Freeman - Chan Zuckerberg Initiative, USA |
| 14:45-15:00 | Quantitative imaging of motile cilia to investigate fluid flows and chirality in the left-right organizer Willy Supatto - Ecole polytechnique, CNRS , INSERM, France |
| 15:00-15:30 | Coffee break and Meet the Invited Speaker: Beth Cimini, Jeremy Freeman |
| 15:30-18:00 | Session 2 - Machine learning Chair: Anna Kreshuk - EMBL Heidelberg, Germany |
| 15:30-16:00 | The road to deeper ilastik Anna Kreshuk - EMBL Heidelberg, Germany |
| 16:00 - 16:15 |
KNIME Image Processing: Status Quo and Future Directions |
| 16:15 - 16:30 | Introducing Yapic: A New Tool for Biologists to Perform Complex Image Segmentation with Deep Learning Christoph Möhl - German Center for Neurodegenerative Disease (DZNE), Germany |
| 16:30 - 17:00 | Coffee break |
| 17:00 - 17:30 | Content-Aware Image Restoration for Light and Electron Microscopy Facilitates Quantitative Data Analysis Florian Jug - Max Planck Institute of Molecular Cell Biology and Genetics, Germany |
| 17:30 - 17:45 | Automated Annotation of C. Elegans: How much Training Data is Needed? Dagmar Kainmueller - Berlin Institute of Health, Max Delbrück Center for Molecular Medicine, Germany |
| 17:45-18:00 | Flash talks (1 slide/2mins each) Albert #23 / Botelho #31/ Bujak #35 / Meyenhofer #79 / Schmidt #95 |
| 18:00-19:30 |
Poster Session 1 (odd numbers) |
| 19:30 |
Free evening |
| Time | Speaker |
|---|---|
| 09:00-10:15 |
Session 3 - Light microscopy 2 Chair: Florian Jug - Max Planck Institute of Molecular Cell Biology and Genetics, Germany |
| 09:00-09:30 |
Correlative Light-Electron Microscopy Based High Resolution Nuclear Model of C. elegans Dauer |
| 09:30-10:00 | NanoJ-SQUIRREL: quantitative mapping and minimisation of super-resolution optical imaging artefacts Siân Culley - University College London, UK |
| 10:00-10:15 |
BigStitcher: Reconstructing high-resolution image datasets of cleared and expanded samples |
| 10:15-10:45 | Coffee break and Meet the Invited Speaker: Stephan Preibisch |
| 10:45-12:00 |
Session 4 - Electron Microscopy analysis |
| 10:45-11:15 |
Mapping and analyzing neuronal circuits with CATMAID software |
| 11:15-11:45 |
N5, ImgLib2-Cache, BigDataViewer, and Spark: my favorite open-source eco-system for super-large image data |
| 11:45-12:00 |
webKnossos: efficient online 3D data annotation |
| 12:00-13:30 |
Lunch |
| 13:30-15:00 |
5 Parallel Workshops - Session 1 |
| 15:00-15:30 |
Coffee break and Meet the Invited Speakers: Albert Cardona, Stephan Saalfeld |
| 15:30-16:55 | 5 Parallel Workshops - Session 2 |
| 17:00-17:15 |
NEUBIAS talk |
| 17:15 - 17:30 |
A natural-language based syntax for animating 3D/4D imaging data |
| 17:30 - 17:45 |
Mastodon -- a large-scale track-editing framework for Fiji |
| 17:45-18:00 |
Flash Talks (1 slide / 2mins each) |
| 18:00-19:30 |
Poster Session 2 (even numbers) |
| 19:30-21:30 |
Conference Dinner |
| 21:30-00:00 |
Conference Party |
| Time | Speaker |
|---|---|
| 09:00-10:15 | Sesion 5 - Atlas projects Chair: Christophe Zimmer - Institut Pasteur, France |
| 09:00-09:30 |
Deep learning as a tool in microscopy data analysis and digital pathology |
| 09:30-10:00 | Archives, Resources and Atlases: An OME Perspective on Structuring Data for the Long Haul Josh Moore - University of Dundee, UK |
| 10:00-10:15 | The mitotic cell atlas Jean-Karim Heriche - EMBL Heidelberg, Germany |
| 10:15-10:45 |
Coffee break and Meet the Invited Speaker: Josh Moore, Virginie Uhlmann, Christoph Zimmer |
| 10:45-12:00 |
Session 6 - Tools and Methods |
| 10:45-11:15 |
New computational lenses for single molecule super-resolution microscopy |
| 11:15-11:45 |
Title TBC |
| 11:45-12:00 |
Example of an end-to-end application of imaging and image analysis to solve a biological problem |
| 12:00-12:15 |
Closing remarks and Poster Prizes |
| 12:15-12:45 |
Packed lunch and departure |
| 12:45 | Bus departures downtown and to Frankfurt Airport |