EMBL Courses and Conferences during the Coronavirus pandemic
With the onsite programme paused, many of our events are now being offered in virtual formats.
Registration is open as usual for many events, with back-up plans in place to move further courses and conferences online as necessary. Registration fees for any events affected by the COVID-19 disruption are fully refundable.
More information for participants of events at EMBL Heidelberg can be found here.
Programme
Got something to say? Tweet it! #EMBLImageJ #I2K
| Time | Speaker |
|---|---|
| 11:00 - 12:45 | Arrival and registration |
| 12:45 - 13:00 | Welcome and opening remarks |
| 13:00 - 13:45 |
ImageJ |
| 13:45-15:00 |
Session 1 - Light microscopy 1 |
| 13:45-14:15 | Using morphological profiling to extract the most from your images Beth Cimini - Broad Institute, USA |
| 14:15-14:45 | Title TBC Jeremy Freeman - Chan Zuckerberg Initiative, USA |
| 14:45-15:00 | Quantitative imaging of motile cilia to investigate fluid flows and chirality in the left-right organizer Willy Supatto - Ecole polytechnique, CNRS , INSERM, France |
| 15:00-15:30 | Coffee break and Meet the Invited Speaker: Beth Cimini, Jeremy Freeman |
| 15:30-18:00 | Session 2 - Machine learning Chair: Anna Kreshuk - EMBL Heidelberg, Germany |
| 15:30-16:00 | The road to deeper ilastik Anna Kreshuk - EMBL Heidelberg, Germany |
| 16:00 - 16:15 |
KNIME Image Processing: Status Quo and Future Directions |
| 16:15 - 16:30 | Introducing Yapic: A New Tool for Biologists to Perform Complex Image Segmentation with Deep Learning Christoph Möhl - German Center for Neurodegenerative Disease (DZNE), Germany |
| 16:30 - 17:00 | Coffee break |
| 17:00 - 17:30 | Content-Aware Image Restoration for Light and Electron Microscopy Facilitates Quantitative Data Analysis Florian Jug - Max Planck Institute of Molecular Cell Biology and Genetics, Germany |
| 17:30 - 17:45 | Automated Annotation of C. Elegans: How much Training Data is Needed? Dagmar Kainmueller - Berlin Institute of Health, Max Delbrück Center for Molecular Medicine, Germany |
| 17:45-18:00 | Flash talks (1 slide/2mins each) Albert #23 / Botelho #31/ Bujak #35 / Meyenhofer #79 / Schmidt #95 |
| 18:00-19:30 |
Poster Session 1 (odd numbers) |
| 19:30 |
Free evening |
| Time | Speaker |
|---|---|
| 09:00-10:15 |
Session 3 - Light microscopy 2 Chair: Florian Jug - Max Planck Institute of Molecular Cell Biology and Genetics, Germany |
| 09:00-09:30 |
Correlative Light-Electron Microscopy Based High Resolution Nuclear Model of C. elegans Dauer |
| 09:30-10:00 | NanoJ-SQUIRREL: quantitative mapping and minimisation of super-resolution optical imaging artefacts Siân Culley - University College London, UK |
| 10:00-10:15 |
BigStitcher: Reconstructing high-resolution image datasets of cleared and expanded samples |
| 10:15-10:45 | Coffee break and Meet the Invited Speaker: Stephan Preibisch |
| 10:45-12:00 |
Session 4 - Electron Microscopy analysis |
| 10:45-11:15 |
Mapping and analyzing neuronal circuits with CATMAID software |
| 11:15-11:45 |
N5, ImgLib2-Cache, BigDataViewer, and Spark: my favorite open-source eco-system for super-large image data |
| 11:45-12:00 |
webKnossos: efficient online 3D data annotation |
| 12:00-13:30 |
Lunch |
| 13:30-15:00 |
5 Parallel Workshops - Session 1 |
| 15:00-15:30 |
Coffee break and Meet the Invited Speakers: Albert Cardona, Stephan Saalfeld |
| 15:30-16:55 | 5 Parallel Workshops - Session 2 |
| 17:00-17:15 |
NEUBIAS talk |
| 17:15 - 17:30 |
A natural-language based syntax for animating 3D/4D imaging data |
| 17:30 - 17:45 |
Mastodon -- a large-scale track-editing framework for Fiji |
| 17:45-18:00 |
Flash Talks (1 slide / 2mins each) |
| 18:00-19:30 |
Poster Session 2 (even numbers) |
| 19:30-21:30 |
Conference Dinner |
| 21:30-00:00 |
Conference Party |
| Time | Speaker |
|---|---|
| 09:00-10:15 | Sesion 5 - Atlas projects Chair: Christophe Zimmer - Institut Pasteur, France |
| 09:00-09:30 |
Deep learning as a tool in microscopy data analysis and digital pathology |
| 09:30-10:00 | Archives, Resources and Atlases: An OME Perspective on Structuring Data for the Long Haul Josh Moore - University of Dundee, UK |
| 10:00-10:15 | The mitotic cell atlas Jean-Karim Heriche - EMBL Heidelberg, Germany |
| 10:15-10:45 |
Coffee break and Meet the Invited Speaker: Josh Moore, Virginie Uhlmann, Christoph Zimmer |
| 10:45-12:00 |
Session 6 - Tools and Methods |
| 10:45-11:15 |
New computational lenses for single molecule super-resolution microscopy |
| 11:15-11:45 |
Title TBC |
| 11:45-12:00 |
Example of an end-to-end application of imaging and image analysis to solve a biological problem |
| 12:00-12:15 |
Closing remarks and Poster Prizes |
| 12:15-12:45 |
Packed lunch and departure |
| 12:45 | Bus departures downtown and to Frankfurt Airport |