Location & dates EMBL Heidelberg, Germany 11 - 16 Mar 2018
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Programme

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Day 1 - Sunday 11th March 2018
TimeSpeaker
13:30 - 14:00 Arrival & Welcome @ ISG Hotel
14:00 - 16:00

RNA-seq: Is it that Simple? 
Vladimir Benes - EMBL Heidelberg, Germany

16:00 - 16:30

Coffee Break

16:30 - 18:00

RNA-seq: From Reads to Genes
(Reference based and alignment-free transcripts counting)
(Duplication artifacts effects on expression estimation.)
(Annotation effect on expression estimation)
Raffaele Calogero - University of Torino, Italy

18:00 - 18:10

 Q & A

Dinner
Day 2 - Monday 12th March 2018
TimeSpeaker
morning

From Reads to Gene Lists
(STAR-RSEM mapping and counting)
(Salmon alignment free counting)
Raffaele Calogero - University of Torino, Italy

afternoon

DESeq2
Simon Anders, ZMBH Heidelberg, Germany

Day 3 - Tuesday 13th March 2018
TimeSpeaker
morning Ribosome profiling
Gerben Menschaert - University of Ghent, Belgium
12:00 - 13:00

Lunch

13:00 - 14:30

Introduction to Proteomics
Jeroen Krijgsveld - DKFZ

14:30 - 15:00

Coffee Break

15:00 - 15:45

Quantitative proteomics: SILAC and other MS1-based approaches
Jeroen Krijgsveld - DKFZ

16:00 - 17:30

Quantitative proteomics: TMT
Mikhail Savitski - EMBL Heidelberg, Germany

Day 4 - Wednesday 14th March 2018
TimeSpeaker
9:00 - 10:30

Talk: Bioinformatics for proteomics
Lennart Martens - University of Ghent, Belgium

10:30 - 11:00

Coffee Break

11:00 - 12:30

Practical Session: Turning data into information-peptide and protein identification, database searching
Lennart Martens - University of Ghent, Belgium

12:30 - 13:30

Lunch

13:30 - 15:00

Practical Session Continues
Lennart Martens - University of Ghent, Belgium

15:00 - 15:30

Coffee Break

15:30 - 17:30

Introduction to MaxQuant; analysis of MS data
Daria Fijalkowska - DKFZ, Germany

Dinner downtown

Day 5 - Thursday 15th March 2018
TimeSpeaker
9:00 - 10:30

Practical Session: Proteomics data interpretation
Daria Fijalkowska - DKFZ, Germany

10:30 - 11:00

Coffee Break

11:00 - 12:00

Bioinformatic tools for data comparison and integration
Matt Rogon - EMBL Heidelberg, Germany

12:00 - 13:00

Lunch

13:00 - 14:30

Introduction to Cytoscape
Matt Rogon - EMBL Heidelberg, Germany

14:30 - 15:00

Coffee Break 

15:00 - 17:30

Introduction to Cytoscape
Matt Rogon - EMBL Heidelberg, Germany

Day 6 - Friday 16th March 2018
TimeSpeaker
09:00 - 10:00

Multi-omics approach on microbial communities
Paul Wilmes - University of Luxembourg, Luxembourg

10:00 - 16:00

Practical Session: Data integration
Matt Rogon - EMBL Heidelberg, Germany