Location & dates EMBL Heidelberg, Germany 3 - 7 Jun 2019
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Programme

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Day 1 - Monday 3 June 2019
TimeSpeakerLocation
14.00 - 14.30

Arrival & Welcome

Seminar Room B01

14.30 - 16.30 Tips and tricks on RNAseq
Vladimir Benes
Seminar Room B01
16.30 - 17.00 Coffee Break Foyer
17.00 - 18.00 Tips and tricks on RNAseq
Vladimir Benes
Seminar Room B01
18.00 -19.00 Dinner
EMBL Canteen
19.00 Shuttle bus to Star Inn Hotel
Day 2 - Tuesday 4 June 2019
TimeSpeakerLocation
08.30 - 10.00

R pills theory and practice
Marco Beccuti

Computer Training Lab

10.00 - 11.00

Experimental design 
Raffaele Calogero

Computer Training Lab

11.00 - 11.30

Coffee Break

Foyer

11.30 - 12.30

Docker4seq/4SeqGUI overview 
Raffaele Calogero

Computer Training Lab

12.30 - 13.30

Lunch

EMBL Canteen

13.30 - 14.00

Docker container and reproducibility
Marco Beccuti

Computer Training Lab
14.00– 15.00

QC
Raffaele Calogero

Computer Training Lab
15.00-15.30

Coffee Break

Foyer

15.30-17.00

Counting reads
Raffaele Calogero

Computer Training Lab

17.00 -18.00

R pills theory and practice
Marco Beccuti

Computer Training Lab
18.00-19.00

Dinner 

EMBL Canteen

19.00

Shuttle bus to Star Inn Hotel

Day 3 - Wednesday 5 June 2019
TimeSpeakerLocation
08.30 - 10.00

R pills theory and practice
Marco Beccuti

Computer Training Lab

10.00 - 11.00

Differential expression analysis 
Raffaele Calogero

Computer Training Lab

11.00 - 11.30

Coffee Break

Foyer

11.30 - 12.30

Differential expression analysis and batch effect
correction using docker containers

Raffaele Calogero

Computer Training Lab

12.30 - 13.30

Lunch

EMBL Canteen

13.30 - 14.30

Isoforms differential expression
Raffaele Calogero

Computer Training Lab
14.30 - 15:30

Exercises

Computer Training Lab
15.30 - 16.30

Mining differential expression results (Ingenuity Pathways Analysis)
Raffaele Calogero

Computer Training Lab
16.30 - 17.00

Coffee Break

Foyer

17.00 - 18.00

R pills theory and practice
Marco Beccuti

Computer Training Lab

18.00 -19.00

Dinner

EMBL Canteen

19:00

Shuttle bus to Star Inn Hotel

Day 4 - Thursday 6 June 2019
TimeSpeakerLocation
08.30 - 10.00

R pills theory and practice
Marco Beccuti

Computer Training Lab

10.00 - 11.00

GO enrichment and GSEA analysis 
Francesca Cordero

Computer Training Lab

11.00 - 11.30

Coffee break

Foyer

11.30 - 12.30

Data visualization, data reduction and clustering 
Francesca Cordero

Computer Training Lab

12.30 - 13.30

Lunch

EMBL Canteen

13.30 - 14.30

miRNA differential expression analysis
Francesca Cordero

Computer Training Lab
14.30 - 16.30

Exercises

Computer Training Lab

16.30 - 17.00

Coffee Break

Foyer

17.00 - 18.00

R pills theory and practice
Marco Beccuti

Computer Training Lab

18.00

Shuttle bus to downtown

18:30

Social Dinner in Oskar Restaurant

Day 5 - Friday 7 June 2019
TimeSpeakerLocation
09.00 - 11.00

Single cells RNAseq workflow
Raffaele Calogero

Computer Training Lab

11.00 - 11.30

Coffee Break

Foyer

11.30 - 12.30

Single cells RNAseq workflow
Raffaele Calogero

Computer Training Lab

12.30 - 13.30

Lunch

EMBL Canteen

13.30 - 16.30

Exercises

Computer Training Lab

16.30 - 17.00

Final remarks
Vladimir Benes, Raffaele Calogero, Marco Beccuti

Computer Training Lab

17.00

Shuttle bus to Main Station

EMBL-Main Station