Location & dates EMBL Heidelberg, Germany 30 Sep - 4 Oct 2019
Deadlines Application closed

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Programme

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Day 1 - Monday 30 September 2019
TimeSpeakerLocation
14:00 - 14:30

Arrival & Welcome

Seminar Room B01

14:30 - 16:30 Tips and tricks on RNAseq
Vladimir Benes - EMBL Heidelberg, Germany
Seminar Room B01
16:30 - 17:00 Coffee Break Foyer
17:00 - 18:00 Tips and tricks on RNAseq
Vladimir Benes - EMBL Heidelberg, Germany
Seminar Room B01
18:00 -19:00 Dinner
EMBL Canteen
Day 2 - Tuesday 1 October 2019
TimeSpeakerLocation
08.30 - 10:00

R pills theory and practice
Marco Beccuti

Computer Training Lab

10:00 - 11:00

Experimental design 
Raffaele Calogero - University of Turin, Italy

Computer Training Lab

11:00 - 11:30

Coffee Break

Foyer

11:30 - 12:30

Docker4seq/4SeqGUI overview 
Raffaele Calogero - University of Turin, Italy

Computer Training Lab

12:30 - 13:30

Lunch

EMBL Canteen

13:30 - 14:00

Docker container and reproducibility
Marco Beccuti - University of Turin, Italy

Computer Training Lab
14:00– 15:00

QC
Raffaele Calogero - University of Turin, Italy

Computer Training Lab
15:00-15:30

Coffee Break

Foyer

15:30-17:00

Counting reads
Raffaele Calogero - University of Turin, Italy

Computer Training Lab

17:00 -18:00

R pills theory and practice
Marco Beccuti - University of Turin, Italy

Computer Training Lab
18:00-19:40

Banquet Dinner 

EMBL Canteen

19:40

Shuttle bus to ISG Hotel

Day 3 - Wednesday 2 October 2019
TimeSpeakerLocation
08:30 - 10:00

R pills theory and practice
Marco Beccuti - University of Turin, Italy

Computer Training Lab

10:00 - 11:00

Differential expression analysis 
Raffaele Calogero - University of Turin, Italy

Computer Training Lab

11:00 - 11:30

Coffee Break

Foyer

11:30 - 12:30

Differential expression analysis and batch effect
correction using docker containers

Raffaele Calogero - University of Turin, Italy

Computer Training Lab

12:30 - 13:30

Lunch

EMBL Canteen

13:30 - 14:30

Isoforms differential expression
Raffaele Calogero - University of Turin, Italy

Computer Training Lab
14:30 - 15:30

Exercises

Computer Training Lab
15:30 - 16:30

Mining differential expression results (Ingenuity Pathways Analysis)
Raffaele Calogero - University of Turin, Italy

Computer Training Lab
16:30 - 17:00

Coffee Break

Foyer

17:00 - 18:00

R pills theory and practice
Marco Beccuti - University of Turin, Italy

Computer Training Lab

18:00 -19:00

Dinner

EMBL Canteen

19:00 

Shuttle bus

Day 4 - Thursday 3 October 2019
TimeSpeakerLocation
08:30 - 10:00

R pills theory and practice
Marco Beccuti - University of Turin, Italy

Computer Training Lab

10:00 - 11:00

GO enrichment and GSEA analysis 
Raffaele Calogero - University of Turin, Italy

Computer Training Lab

11:00 - 11:30

Coffee break

Foyer

11:30 - 12:30

Data visualization, data reduction and clustering 
Raffaele Calogero - University of Turin, Italy

Computer Training Lab

12:30 - 13:30

Lunch

EMBL Canteen

13:30 - 14:30

miRNA differential expression analysis
Raffaele Calogero - University of Turin, Italy

Computer Training Lab
14:30 - 16:30

Exercises

Computer Training Lab

16:30 - 17:00

Coffee Break

Foyer

17:00 - 18:00

R pills theory and practice
Marco Beccuti  - University of Turin, Italy

Computer Training Lab

18:00

Shuttle bus

18:30

Social Dinner

Day 5 - Friday 4 October 2019
TimeSpeakerLocation
09:00 - 11:00

Single cells RNAseq workflow
Raffaele Calogero - University of Turin, Italy

Computer Training Lab

11:00 - 11:30

Coffee Break

Foyer

11:30 - 12:30

Single cells RNAseq workflow
Raffaele Calogero - University of Turin, Italy

Computer Training Lab

12:30 - 13:30

Lunch

EMBL Canteen

13:30 - 16:30

Exercises

Computer Training Lab

16:30 - 16:45

Final remarks
Vladimir Benes Vladimir Benes - EMBL Heidelberg, Germany
Marco Beccuti - University of Turin, Italy

Computer Training Lab

16:45

Shuttle bus to Main Station

EMBL-Main Station