Location & dates EMBL Heidelberg, Germany 3 - 8 Feb 2019
Deadlines Application closed

EMBL Courses and Conferences during the Coronavirus pandemic

With the onsite programme paused, many of our events are now being offered in virtual formats.


Registration is open as usual for many events, with back-up plans in place to move further courses and conferences online as necessary. Registration fees for any events affected by the COVID-19 disruption are fully refundable.


More information for participants of events at EMBL Heidelberg can be found here.

Programme

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Day 1 - Sunday 3 February 2019
TimeSpeakerLocation
13:30 - 14:00

Arrival & Welcome

Computer Training Lab

14:00 - 16:00

Lecture: RNA-seq: Is it that Simple?
Vladimir Benes - EMBL Heidelberg, Germany

Computer Training Lab

16:00 - 16:30

Coffee break

Computer Training Lab

16:30 - 18:00

Lecture: RNA-seq: From Reads to Genes
-Reference based and alignment-free transcripts counting
-Duplication artifacts effects on expression estimation
-Annotation effect on expression estimation
Raffaele Calogero - University of Torino, Italy

Computer Training Lab

18:00 - 18:10

Q & A

Computer Training Lab

18:10 - 19:10

Dinner

Rooftop Lounge

19:10

Shuttle to the Hotel

Day 2 - Monday 4 February 2019
TimeSpeakerLocation
09:00 - 12:00

Lecture: From Reads to Gene Lists
-STAR-RSEM mapping and counting
-Salmon alignment free counting
Raffaele Calogero - University of Torino, Italy

Computer Training Lab

09:00 - 12:00 Lunch

EMBL Canteen

13:00 - 18:00

Lecture: Differential expression analysis: Two groups and multiple groups comparisons using DEseq2 and edgeR anova-like tools
Raffaele Calogero - University of Torino, Italy

Computer Training Lab

18:00 - 19:00

Dinner

EMBL Canteen

19:00

Shuttle to the Hotel

Day 3 - Tuesday 5 February 2019
TimeSpeakerLocation
09:00 - 12:00

Lecture: Ribosome profiling
Gerben Menschaert - University of Ghent, Belgium

Computer Training Lab

12:00 - 13:00

Lunch

EMBL Canteen

13:00 - 14:30

Lecture: Introduction to Proteomics
Jeroen Krijgsveld - DKFZ, Germany

Computer Training Lab

14:30 - 15:00

Coffee Break

Computer Training Lab

15:00 - 15:45

Lecture: Quantitative proteomics: SILAC and other MS1-based approaches
Jeroen Krijgsveld - DKFZ, Germany

Computer Training Lab

16:00 - 17:30

Lecture: Quantitative proteomics: TMT
Andre Nogueira Mateus - EMBL Heidelberg, Germany

Computer Training Lab

18:00 - 19:00

Dinner

EMBL Canteen

19:00

Shuttle to the Hotel

Day 4 - Wednesday 6 February 2019
TimeSpeakerLocation
09:00 - 10:30

Lecture: Bioinformatics for proteomics
Lennart Martens - University of Ghent, Belgium

Computer Training Lab

10:30 - 11:00 Coffee Break

Computer Training Lab

11:00 - 12:30

Practical Session: Turning data into information-peptide and protein identification, database searching
Lennart Martens - University of Ghent, Belgium

Computer Training Lab

12:30 - 13:30

Lunch

EMBL Canteen

13:30 - 15:00

Practical Session: Turning data into information-peptide and protein identification, database searching (Cont.)
Lennart Martens - University of Ghent, Belgium

Computer Training Lab

15:00 - 15:30

Coffee Break

Computer Training Lab
15:30 - 17:30

Lecture: Introduction to MaxQuant; analysis of MS data
Daria Fijalkowska - DKFZ, Germany

Computer Training Lab

17:30 - 18:00

Shuttle downtown

18:00

Dinner Downtown

Day 5 - Thursday 7 February 2019
TimeSpeakerLocation
09:00 - 10:30

Practical Session: Proteomics data interpretation
Daria Fijalkowska - DKFZ, Germany

Computer Training Lab

10:30 - 11:00

Coffee Break

Computer Training Lab

11:00 - 12:00

Lecture: Bioinformatic tools for data comparison and integration
Matt Rogon - EMBL Heidelberg, Germany

Computer Training Lab

12:00 - 13:00

Lunch

EMBL Canteen

13:00 - 14:30

Practical: Introduction to Cytoscape
Matt Rogon - EMBL Heidelberg, Germany
Manjeet Kumar - EMBL Heidelberg, Germany

Computer Training Lab

14:30 - 15:00

Coffee Break

Computer Training Lab

15:00 - 16:30

Practical: Introduction to Cytoscape
Matt Rogon - EMBL Heidelberg, Germany
Manjeet Kumar - EMBL Heidelberg, Germany

Computer Training Lab

16:30 - 17:30

Lecture and Practical: Enrichment analysis
Manjeet Kumar - EMBL Heidelberg, Germany
Matt Rogon - EMBL Heidelberg, Germany

Computer Training Lab

17:30

Free Evening

Day 6 - Friday 8 February 2019
TimeSpeakerLocation
09:00 - 10:00

Application talk: Integration of multi-omics for cellular dynamics and prediction analysis
Hyungwon Choi - National University of Singapore, Singapore

Computer Training Lab

10:00 - 16:00

Practical Session: Data integration
Matt Rogon - EMBL Heidelberg, Germany

Computer Training Lab

12:30 - 13:30

Lunch

EMBL Canteen

10:00 - 16:00

Practical Session: Data integration
Matt Rogon - EMBL Heidelberg, Germany

Rooftop Lounge

16:00

Shuttle to Train Station and Crown Plaza Hotel

Lecture: RNA-seq: Is it that Simple?
Vladimir Benes - EMBL Heidelberg, Germany