Arrival & Welcome

Computer Training Lab

Introduction: Quantitative proteomics for biology
Jeroen Krijgsveld  - DKFZ, Heidelberg, Germany
Paola Picotti - ETH Zurich, Switzerland
Mikhail Savitski - EMBL Heidelberg, Germany

Computer Training Lab

Lecture: Peptide chromatography in proteomics
Shabaz Mohammed - University of Oxford, UK

Coffee break

Computer Training Lab

Flash talks by participants - Even numbers

Computer Training Lab

Poster session (even numbers) & Drinks

Operon Foyer

Dinner

Operon Foyer

Shuttle back to ISG Hotel

Lecture: MS technologies
Dominic Helm - EMBL Heidelberg, Germany

Computer Training Lab

Lecture: Protein identification
Lennart Martens - University of Ghent, Belgium

Computer Training Lab

Coffee break

Computer Training Lab

Practical: Protein identification
Lennart Martens - University of Ghent, Belgium
Tim Van Den Bossche - University of Ghent, Belgium

Computer Training Lab

Lunch break

EMBL Canteen

Practical: Peptide and Protein Identification
Lennart Martens - University of Ghent, Belgium
Tim Van Den Bossche - University of Ghent, Belgium

Computer Training Lab

Lab tour + Coffee break

Computer Training Lab

Flash talks by participants - Odd numbers

Computer Training Lab

Lecture: Application talk
Paola Picotti - ETH Zurich, Switzerland

Computer Training Lab

EMBL Canteen

Poster session (Odd numbers) & Drinks

Operon Foyer

Shuttle back to ISG Hotel

Lecture: MS1-based quantification
Moritz Janda - Thermo Fisher Scientific, Germany

Computer Training Lab

Practical: Data analysis by MaxQuant
Juergen Cox - Max Planck Institute, Germany

Computer Training Lab

Lunch break

EMBL Canteen

Practical: Data analysis by MaxQuant
Juergen Cox - Max Planck Institute, Germany

Computer Training Lab

Coffee break

Computer Training Lab

Lecture: Application talk ‘Data integration’
Jyoti Choudhary - The Institute of Cancer Research, UK

Computer Training Lab

Lecture: Application talk ‘Proteome dynamics’
Jeroen Krijgsveld - DKFZ, Germany

Computer Training Lab

ISG Hotel

Lecture: Introduction and application talk MS2-based quantification: TMT
Mikhail Savitski - EMBL Heidelberg, Germany

Computer Training Lab

Practical: Statistical analysis of quantitative proteomics data
Mikhail Savitski - EMBL Heidelberg, Germany
Frank Stein - EMBL Heidelberg, Germany
Nils Kurzawa - EMBL Heidelberg, Germany

Computer Training Lab

Lunch break

EMBL Canteen

Practical: Statistical analysis of quantitative proteomics data
Mikhail Savitski - EMBL Heidelberg, Germany
Frank Stein - EMBL Heidelberg, Germany
Nils Kurzawa - EMBL Heidelberg, Germany

Computer Training Lab

Coffee break

Computer Training Lab

Introduction and tutorial: ‘Label-free quantification & MS platforms for DDA and DIA’
Moritz Janda - Thermo Fisher Scientific, Germany

Computer Training Lab

Shuttle back to ISGH Hotel and Neckarmünzplatz

Free evening

Targeting proteomes using data independent acquisition (DIA)-based proteomics and SWATH-MS - An introduction into the basic principles
Christina Ludwig - Technical University Munich, Germany

Computer Training Lab

Coffee break

Computer Training Lab

Life demonstration (practical session): “An introduction into Skyline – a chromatogram-based software tool for targeted proteomics”
Christina Ludwig - Technical University Munich, Germany
Monika Pepelnjak - ETH Zürich, Switzerland

Computer Training Lab

Lunch break

EMBL Canteen

Tutorial (practical session): “Label-free quantification of DIA/SWATH data using Skyline”
Christina Ludwig - Technical University Munich, Germany
Monika Pepelnjak - ETH Zürich, Switzerland

Computer Training Lab

Lecture: 'Cross-linking mass spectrometry’
Fan Liu - Leibniz Institute for Molecular Pharmacology, Germany

Computer Training Lab

Lecture: Methods for Whole Proteoform Characterization and Quantitation
Neil Kelleher - Northwestern University, USA

Computer Training Lab

Computer Training Lab

EMBL Canteen

Presentations from break-out session & panel discussion

Computer Training Lab

Lecture: 'Spatial proteomics'
Kathryn Lilley - Cambridge University, UK

Computer Training Lab

Computer Training Lab

Bus to Heidelberg Train Station & Crown Plaza Hotel