Coronavirus information for participants
The onsite course and conference programme at EMBL has been paused until the end of June 2020.
We aim to continue offering our advanced training for the scientific community however we safely can. While some events have been cancelled, many have been rescheduled for a later date and others will be delivered as virtual events.
Registration is open for onsite courses and conferences starting after 1 July and for the virtual events. All registration fees for any events which don’t take place due to the COVID-19 disruption are fully refundable.
More information for participants of events at EMBL Heidelberg can be found here.
Programme
| Time | Speaker | Location |
|---|---|---|
| 09:00 - 09:30 |
Arrival and Welcome Remarks |
Courtyard Room A+B |
| 09:30 - 11:00 |
Flash Talks |
Courtyard Room A+B |
| 11:00 - 11:30 |
Coffee break |
Courtyard Room A+B |
| 11:30 - 12:30 |
Keynote Lecture: Image restoration using deep learning |
Courtyard Room A+B |
| 12:30 - 13:30 |
Lunch break |
EMBL Canteen |
| 13:30 - 14:00 |
Explanation of Daily-Scrum concept (for following days) |
Courtyard Room A+B |
| 14:00 - 16:00 |
Practical: Work on own data (focus: image restoration) |
Computer Training Lab |
| 16:00 - 16:30 |
Coffee break |
Courtyard Room A+B |
| 16:30 - 17:00 |
Super-resolution microscopy image analysis |
Courtyard Room A+B |
| 17:00 - 18:30 |
Practical: Super-resolution and image restoration quality control |
Computer Training Lab |
| 18:30 - 19:30 |
Dinner |
EMBL Canteen |
| 19:30 - 21:30 |
Poster session |
ATC Rooftop Lounge |
| Time | Speaker | Location |
|---|---|---|
| 09:00 - 09:30 |
Welcome coffee, social networking |
Courtyard Room A+B |
| 09:30 - 10:30 |
Keynote Lecture: MorphographX, 3D segmentation of plant images |
Courtyard Room A+B |
| 10:30 - 11:00 |
Discussion round with the speaker |
Courtyard Room A+B |
| 11:00 - 12:30 |
Practical: morphographX software hands-on |
Computer Training Lab |
| 12:30 - 13:30 |
Lunch break |
EMBL Canteen |
| 13:30 - 14:00 |
Daily-Scrum (feedback on previous day’s work on own data) |
Courtyard Room A+B |
| 14:00 - 16:00 |
Practical: Work on own data (focus: image segmentation) |
Computer Training Lab |
| 16:00 - 16:30 |
Coffee break |
Courtyard Room A+B |
| 16:30 - 17:00 |
Spline-based active contours |
Courtyard Room A+B |
| 17:00 - 18:30 |
Practical: Active contours |
Computer Training Lab |
| 18:30 - 21:30 |
Dinner and Networking: Software lounge |
ATC Rooftop Lounge |
| Time | Speaker | Location |
|---|---|---|
| 09:00 - 09:30 |
Welcome coffee, social networking |
Courtyard Room A+B |
| 09:30 - 10:30 |
Keynote Lecture: Ilastik, segmentation, classification |
Courtyard Room A+B |
| 10:30 - 11:00 |
Discussion round with the speaker |
Courtyard Room A+B |
| 11:00 - 12:30 |
Practical: ilastik software hands-on (supervised machine learning) |
Computer Training Lab |
| 12:30 - 13:30 |
Lunch Break |
EMBL Canteen |
| 13:30 - 14:00 |
Daily-Scrum (feedback on previous day’s work on own data) |
Courtyard Room A+B |
| 14:00 - 16:00 |
Practical: Work on own data (focus: deep and shallow learning) |
Computer Training Lab |
| 16:00 - 16:30 |
Coffee break |
Courtyard Room A+B |
| 16:30 - 22:00 |
Social networking: hike to restaurant Waldschenke on Heiligenberg |
Restaurant |
| Time | Speaker | Location |
|---|---|---|
| 09:00 - 09:30 |
Welcome coffee, social networking |
Courtyard Room A+B |
| 09:30 - 10:30 |
Keynote Lecture: Computational phenotyping |
Courtyard Room A+B |
| 10:30 - 11:00 |
Discussion round with the speaker |
Courtyard Room A+B |
| 11:00 - 12:30 |
Practical: Computational phenotyping |
Computer Training Lab |
| 12:30 - 13:30 |
Lunch Break |
EMBL Canteen |
| 13:30 - 14:00 |
Daily-Scrum (feedback on previous day’s work on own data) |
Courtyard Room A+B |
| 14:00 - 16:00 |
Practical: Work on own data (focus: cell phenotyping) |
Computer Training Lab |
| 16:00 - 16:30 |
Coffee break |
Courtyard Room A+B |
| 16:30 - 17:00 |
ZEISS Talk: APEER cloud based image analysis |
Courtyard Room A+B |
| 17:00 - 18:30 |
Practical: Building work-flows and modules with APEER |
Computer Training Lab |
| 18:30 - 19:30 |
Dinner |
EMBL Canteen |
| 19:30 - 21:30 |
Practical: Continued work on own data |
Computer Training Lab |
| Time | Speaker | Location |
|---|---|---|
| 09:00 - 09:30 |
Welcome coffee, social networking |
Courtyard Room A+B |
| 09:30 - 10:30 |
Keynote Lecture: QuPath, digital pathology |
Courtyard Room A+B |
| 10:30 - 11:00 |
Discussion round with the speaker |
Courtyard Room A+B |
| 11:00 - 12:30 |
Practical: QuPath software hands-on |
Computer Training Lab |
| 12:30 - 13:30 |
Lunch break |
EMBL Canteen |
| 13:30 - 14:00 |
Daily-Scrum (feedback on previous day’s work on own data) |
Courtyard Room A+B |
| 14:00 - 16:00 |
Practical: Work on own data (focus: region classification) |
Computer Training Lab |
| 16:00 - 16:30 |
Coffee break |
Courtyard Room A+B |
| 16:30 - 17:00 |
Image data and results visualisation |
Courtyard Room A+B |
| 17:00 - 18:30 |
Practical: Image data and results visualisation |
Computer Training Lab |
| 18:30 - 19:30 |
Dinner |
EMBL Canteen |
| 19:30 - 21:30 |
Train the trainer: How to do bioimage analysis consultancy |
Courtyard Room A+B |
| Time | Speaker | Location |
|---|---|---|
| 09:00 - 09:30 |
Welcome coffee, social networking |
Courtyard Room A+B |
| 09:30 - 10:30 |
Keynote Lecture: Spatial statistics in biomedical images |
Courtyard Room A+B |
| 10:30 - 11:00 |
Discussion round with the speaker |
Courtyard Room A+B |
| 11:00 - 12:30 |
Practical: Spatial statistics |
Computer Training Lab |
| 12:30 - 13:30 |
Lunch break |
EMBL Canteen |
| 13:30 - 16:00 |
Presentations of results obtained during work on own data |
Courtyard Room A+B |
| 16:00 - 16:30 |
Coffee break |
Courtyard Room A+B |
| 17:00 - 17:30 |
Imaris Talk: Interfacing with ImarisXT |
Courtyard Room A+B |
| 17:30 - 18:30 |
Practical: Interfacing to ImarisXT |
Computer Training Lab |
| 18:30 |
Bus to ISG Hotel |
EMBL Bus Stop |
| 19:00 - 22:00 |
Dinner and discussions |
ISG Hotel |
| Time | Speaker | Location |
|---|---|---|
| 09:00 - 10:30 |
Train-the-Trainer: How to teach bioimage analysis courses |
Courtyard Room A+B |
| 10:30 - 11:00 |
Coffee break |
Courtyard Room A+B |
| 11:00 – 12:00 |
Closing remarks and feedback session |
Courtyard Room A+B |
| 12:00 |
Packed lunch and Bus to downtown (train station) |
Courtyard Room A+B |