Arrival and Welcome Remarks

Courtyard Room A+B

Flash Talks

Courtyard Room A+B

Coffee break

Courtyard Room A+B

Keynote Lecture: Image restoration using deep learning
Florian Jug - Max Planck Institute of Molecular Cell Biology and Genetics, Germany

Courtyard Room A+B

Lunch break

EMBL Canteen

Explanation of Daily-Scrum concept (for following days)

Courtyard Room A+B

Practical: Work on own data (focus: image restoration)

Computer Training Lab

Coffee break

Super-resolution microscopy image analysis
Siân Culley - University College London, UK

Courtyard Room A+B

Practical: Super-resolution and image restoration quality control

Computer Training Lab

Dinner

EMBL Canteen 

Poster session 

ATC Rooftop Lounge

Welcome coffee, social networking

Courtyard Room A+B

Keynote Lecture: MorphographX, 3D segmentation of plant images
Anne-Lise Routier-Kierzkowska - University of Montréal, Canada

Courtyard Room A+B

Discussion round with the speaker

Courtyard Room A+B

Practical: morphographX software hands-on

Computer Training Lab

Lunch break

EMBL Canteen

Daily-Scrum (feedback on previous day’s work on own data)

Practical: Work on own data (focus: image segmentation)

Computer Training Lab

Coffee break

Courtyard Room A+B

Spline-based active contours
Virginie Uhlmann - EMBL-EBI Hinxton, UK

Courtyard Room A+B

Practical: Active contours

Computer Training Lab

Dinner and Networking: Software lounge

ATC Rooftop Lounge

Welcome coffee, social networking

Courtyard Room A+B

Keynote Lecture: Ilastik, segmentation, classification
Anna Kreshuk - EMBL Heidelberg, Germany

Courtyard Room A+B

Discussion round with the speaker

Courtyard Room A+B

Practical: ilastik software hands-on (supervised machine learning)

Computer Training Lab

Lunch Break

EMBL Canteen

Daily-Scrum (feedback on previous day’s work on own data)

Practical: Work on own data (focus: deep and shallow learning)

Computer Training Lab

Coffee break

Courtyard Room A+B

Social networking: hike to restaurant Waldschenke on Heiligenberg

Restaurant

Welcome coffee, social networking

Courtyard Room A+B

Keynote Lecture: Computational phenotyping
Thomas Walther - Institut Curie, France

Courtyard Room A+B

Discussion round with the speaker

Courtyard Room A+B

Practical: Computational phenotyping

Computer Training Lab

Lunch Break

EMBL Canteen

Daily-Scrum (feedback on previous day’s work on own data)

Practical: Work on own data (focus: cell phenotyping)

Computer Training Lab

Coffee break

Courtyard Room A+B

ZEISS Talk: APEER cloud based image analysis

Courtyard Room A+B

Practical: Building work-flows and modules with APEER

Dinner

Practical: Continued work on own data

Computer Training Lab

Welcome coffee, social networking

Courtyard Room A+B

Keynote Lecture: QuPath, digital pathology
Peter Bankhead - University of Edinburgh, UK

Courtyard Room A+B

Discussion round with the speaker

Courtyard Room A+B

Practical: QuPath software hands-on

Computer Training Lab

Lunch break

EMBL Canteen

Daily-Scrum (feedback on previous day’s work on own data)

Practical: Work on own data (focus: region classification)

Computer Training Lab

Coffee break

Courtyard Room A+B

Image data and results visualisation
Christian Tischer - EMBL Heidelberg, Germany

Courtyard Room A+B

Practical: Image data and results visualisation

Computer Training Lab

Dinner

EMBL Canteen

Train the trainer: How to do bioimage analysis consultancy

Courtyard Room A+B

Welcome coffee, social networking

Courtyard Room A+B

Keynote Lecture: Spatial statistics in biomedical images
Carolina Wählby - Uppsala University, Sweden

Courtyard Room A+B

Discussion round with the speaker

Courtyard Room A+B

Practical: Spatial statistics

Computer Training Lab

Lunch break

EMBL Canteen

Presentations of results obtained during work on own data

Courtyard Room A+B

Coffee break

Imaris Talk: Interfacing with ImarisXT

Courtyard Room A+B

Practical: Interfacing to ImarisXT

Computer Training Lab

Bus to ISG Hotel

EMBL Bus Stop

Dinner and discussions

ISG Hotel

Train-the-Trainer: How to teach bioimage analysis courses

Courtyard Room A+B

Coffee break

Courtyard Room A+B

Closing remarks and feedback session

Courtyard Room A+B

Packed lunch and Bus to downtown (train station)

Courtyard Room A+B