Location & dates EMBL Heidelberg, Germany 28 Sep - 2 Oct 2020
Deadlines Application closed

EMBL Courses and Conferences during the Coronavirus pandemic

With the onsite programme paused, many of our events are now being offered in virtual formats.


Registration is open as usual for many events, with back-up plans in place to move further courses and conferences online as necessary. Registration fees for any events affected by the COVID-19 disruption are fully refundable.


More information for participants of events at EMBL Heidelberg can be found here.

Programme

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Day 1 - Monday 28 September 2020
TimeSpeakerLocation
09:00 - 09:30

Arrival & welcome

Seminar Room B01

09:30 - 10:30

Tips and tricks on RNAseq
Vladimir Benes

Seminar Room B01

10:30 - 11:00

Coffee break

Outside Seminar Room B01

11:00 - 13:00

Tips and tricks on RNAseq
Vladimir Benes

Seminar Room B01

13:00 - 14:00 Lunch

EMBL Canteen

14:00 - 15:00

R pils
Marco Beccuti

Computer Training Lab

15:00 - 15:30 Experimental design
Raffaele Calogero
Computer Training Lab
15:30 - 16:00 Coffee break Foyer
16:00 - 16:30 Docker4seq/4SeqGUI overview
Raffaele Calogero
Computer Training Lab
16:30 - 17:00

Docker container and reproducibility
Marco Beccuti

Computer Training Lab
17:00 - 18:00

R pills theory and practice
Marco Beccuti

Computer Training Lab
18:00 - 19:00 Dinner
EMBL Canteen
19:00 Shuttle bus to ISG Hotel
Day 2 - Tuesday 29 September 2020
TimeSpeakerLocation
08:30 - 10:00

R pills theory and practice
Marco Beccuti

Computer Training Lab

10:00 - 11:00

QC
Raffaele Calogero

Computer Training Lab

11:00 - 11:30

Coffee break

Foyer

11:30 - 12:30

Counting reads bulk RNAseq 
Raffaele Calogero, Marco Beccuti

Computer Training Lab

12:30 - 13:30

Lunch

EMBL Canteen

13:30 - 14:00

Counting reads bulk RNAseq 
Raffaele Calogero, Marco Beccuti

Computer Training Lab
14:00 – 15:00

Counting reads bulk miRNAseq 
Francesca Cordero

Computer Training Lab
15:00 - 15:30

Coffee break

Foyer

15:30 - 17:00

PCA and Exercises 
Raffaele Calogero

Computer Training Lab

17:00 - 18:00

R pills theory and practice
Marco Beccuti

Computer Training Lab
18:00 - 19:00

Dinner 

EMBL Canteen

19:00

Shuttle bus to ISG

Day 3 - Wednesday 30 September 2020
TimeSpeakerLocation
08:30 - 10:00

R pills theory and practice
Marco Beccuti

Computer Training Lab

10:00 - 11:00

Differential expression analysis 
Raffaele Calogero

Computer Training Lab

11:00 - 11:30

Coffee break

Foyer

11:30 - 12:30

Differential expression analysis and batch effect
correction using docker containers

Raffaele Calogero

Computer Training Lab

12:30 - 13:30

Lunch

EMBL Canteen

13:30 - 14:30

Differential expression analysis for multiple groups: ANOVA-like 
Raffaele Calogero

Computer Training Lab
14:30 - 15:30

Exercises

Computer Training Lab
15.30 - 16:30

Mining differential expression results (GO enrichment) 
Francesca Cordero

Computer Training Lab
16:30 - 17:00

Coffee break

Foyer

17:00 - 18:00

R pills theory and practice
Marco Beccuti

Computer Training Lab

19:00

Social Dinner 

Heidelberg downtown

Day 4 - Thursday 1 October 2020
TimeSpeakerLocation
08:30 - 10:00

R pills theory and practice
Marco Beccuti

Computer Training Lab

10:00 - 11:00

Mining differential expression results (IPA analysis) 
Raffaele Calogero

Computer Training Lab

11:00 - 11:30

Coffee break

Foyer

11:30 - 12:30

Data visualization, data reduction and clustering 
Francesca Cordero

Computer Training Lab

12:30 - 13:30

Lunch

EMBL Canteen

13:30 - 15:30

Exercises

Computer Training Lab
15:30 - 16:30

Single cells RNAseq workflow part 1
Raffaele Calogero

Computer Training Lab

16:30 - 17:00

Coffee break

Foyer

17:00 - 18:00

R pills theory and practice
Marco Beccuti

Computer Training Lab

18:00

Dinner 

EMBL Canteen

18:30

Shuttle bus to ISG

Day 5 - Friday 2 October 2020
TimeSpeakerLocation
09:00 - 11:00

Single cells RNAseq workflow part 2 and exercises
Raffaele Calogero

Computer Training Lab

11:00 - 11:30

Coffee break

Foyer

11:30 - 12:30

Single cells RNAseq workflow part 2 and exercises
Raffaele Calogero

Computer Training Lab

12:30 - 13:30

Lunch

EMBL Canteen

13:30 - 16:30

Exercises

Computer Training Lab

16:30 - 17:00

Final remarks
Vladimir Benes, Raffaele Calogero, Marco Beccuti,
Francesca Cordero

Computer Training Lab

17:00

Shuttle bus to Main Station

EMBL-Main Station