
EMBL Courses and Conferences during the Coronavirus pandemic
With the onsite programme paused, many of our events are now being offered in virtual formats.
Registration is open as usual for many events, with back-up plans in place to move further courses and conferences online as necessary. Registration fees for any events affected by the COVID-19 disruption are fully refundable.
More information for participants of events at EMBL Heidelberg can be found here.
Programme
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Time | Speaker | Location |
---|---|---|
13:45 - 14:00 |
Registration |
ISG Hotel |
from 14:00 |
Welcome by organisers |
ISG Hotel |
Ice Breaking Activity Elisabeth Zielonka - EMBL Heidelberg, Germany |
ISG Hotel |
|
Introduction & Course Overview Pavel Baranov - University College Cork, Ireland Sebastian Leidel - University of Bern, Switzerland Jan Medenbach - University of Regensburg, Germany |
ISG Hotel |
|
Introduction to speakers and trainers |
ISG Hotel |
|
Flash Talk Session |
ISG Hotel |
|
from 19:00 |
Barbecue Dinner |
ISG Hotel |
Time | Speaker | Location |
---|---|---|
08:30 |
Welcome and Housenotes |
Flex Labs A & B |
Overview of the day |
Flex Labs A & B |
|
Practical: |
Training Lab B |
|
Coffee break |
Outside Flex Lab Area |
|
Practical: |
Training Lab B |
|
13:00 - 14:00 |
Lunch break |
EMBL Canteen |
Computer Class: |
Computer Training Lab |
|
Coffee break |
Outside Flex Lab Area |
|
Practical: |
Training Lab B |
|
19:00 - 20:00 |
Dinner |
EMBL Canteen |
Time | Speaker | Location |
---|---|---|
09:00 |
Overview of the day |
Flex Labs A & B |
Practical: |
Training Lab B |
|
Coffee break |
Outside Flex Lab Area |
|
Practical continued: RFP gel and size selection Lab work |
Training Lab B |
|
13:00 - 14:00 |
Lunch break |
EMBL Canteen |
Practical: Gel extraction |
Training Lab B |
|
Coffee break |
Outside Flex Lab Area |
|
Computer Class: Mapping footprints to reference sequences. Meta analysis of the datasets |
Computer Training Lab |
|
State of the art and future developments in ribosome profiling Nicholas Ingolia - University of California, Berkeley, USA |
Flex Labs A & B |
|
18:00 - 19:00 | Dinner and Round Table Discussion: The Technology in different species; what are the key quality controls? |
EMBL Canteen / ATC Rooftop Lounge |
19:00 - 21:00 |
Poster Session & Discussion I |
ATC Helix A |
Time | Speaker | Location |
---|---|---|
09:00 | Overview of the day |
Flex Labs A & B |
Practical: Substrate hybridization, dephosphorylation, linker ligation |
Training Lab B |
|
Coffee break |
Outside Flex Lab Area |
|
Biophysical approaches for measuring translational dynamics |
Flex Labs A & B |
|
12:30 - 13:30 |
Lunch break |
EMBL Canteen |
Probing Ribosomal Stalling |
Flex Labs A & B |
|
Coffee break |
Outside Flex Lab Area |
|
GeneCore Facility Tour and Introduction to Sequencing Technology Vladimir Benes - EMBL Heidelberg, Germany |
EMBL GeneCore Facility |
|
Computer Class: Differential gene expression (transcription, translation and protein synthesis) |
Computer Training Lab | |
17:30 | Bus to ISG Hotel and Neckarmünzplatz | |
18:30 - 20:00 | Guided tour of Heidelberg | Neckarmünzplatz |
from 20:00 |
Course Dinner |
Restaurant in downtown Heidelberg |
Time | Speaker | Location |
---|---|---|
09:00 | Overview of the day |
Flex Labs A & B |
Practical: Size selection Gel after linker ligation (oligo depletion step) |
Training Lab B |
|
Coffee break |
Outside Flex Lab Area |
|
Current Applications: Translational regulation in Proliferation and Tumorigenesis |
Flex Labs A & B |
|
12:30 - 13:30 |
Lunch break |
EMBL Canteen |
Practical: |
Training Lab B |
|
Coffee break |
Outside Flex Lab Area |
|
TCP-Seq and applications |
Flex Labs A & B |
|
Group activity: Discussion Round: |
Flex Labs A & B |
|
18:30 - 19:00 |
Pizza dinner |
ATC Rooftop Lounge |
19:00 - 20:30 |
Poster Session & Discussion II |
ATC Helix A |
Time | Speaker | Location |
---|---|---|
09:00 | Overview of the day |
Flex Labs A & B |
Practical: |
Training Lab B |
|
Coffee break |
Outside Flex Lab Area |
|
Computer Class: Detection of short ORF translation, alternative proteoforms and ribosome pauses |
Computer Training Lab |
|
13:00 - 14:00 |
Lunch break |
EMBL Canteen |
Practical: Gel analysis and oligo rRNA depletion |
Training Lab B |
|
Coffee break | Outside Flex Lab Area | |
Computer Class: The use of public data resources |
Computer Training Lab |
|
Discussion Round: Data analysis bottle necks and artefacts; user defined questions |
Computer Training Lab |
|
from 18:30 |
Flammkuchen Dinner |
ISG Hotel |
Time | Speaker | Location |
---|---|---|
09:00 | Overview of the day |
Flex Labs A & B |
Practical: Ribosome-profiling Quality assessment (Test PCR) |
Training Lab B |
|
Coffee break |
Outside Flex Lab Area |
|
Genomewide identification of bioactive peptides using RiboSeq and Mass spec Gerben Menschaert - University of Ghent, Belgium |
Flex Labs A & B |
|
12:00 - 13:00 |
Lunch break |
EMBL Canteen |
Computer Class: Detection of non-standard translation events: non-AUG initiation, stop codon readthrough, ribosomal frameshifting |
Computer Training Lab |
|
Computer Class: |
Computer Training Lab | |
Open Discussion and Feedback |
Computer Training Lab / Flex Labs A & B |
|
16:30 |
End of course |