Location & dates EMBL Heidelberg, Germany 2 - 7 Feb 2020
Deadlines Application closed

EMBL Courses and Conferences during the Coronavirus pandemic

With the onsite programme paused, many of our events are now being offered in virtual formats.


Registration is open as usual for many events, with back-up plans in place to move further courses and conferences online as necessary. Registration fees for any events affected by the COVID-19 disruption are fully refundable.


More information for participants of events at EMBL Heidelberg can be found here.

Programme

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Day 1 - Sunday 2 February 2020
TimeSpeakerLocation
08:45

Bus from ISG Hotel to EMBL ATC entrance

ISG Hotel bus stop

09:00 - 09:30

Arrival & Welcome

Courtyard Room

09:30 - 10:30

Lecture: RNA-seq: Is it that Simple?
Vladimir Benes - EMBL Heidelberg, Germany

Courtyard Room

10:30 - 11:00

Coffee break

Courtyard Room

11:00 - 12:30 

Lecture: RNA-seq: Is it that Simple?
Vladimir Benes - EMBL Heidelberg, Germany

Courtyard Room

12:30 - 13:30

Lunch

13:30 - 15:30

Lecture: RNA-seq: From Reads to Genes
-Reference based and alignment-free transcripts counting
-Duplication artifacts effects on expression estimation
-Annotation effect on expression estimation
Raffaele Calogero - University of Torino, Italy

Computer Training Lab
15:30 - 16:00

Coffee break

Computer Training Lab
16:00 - 18:00

Practical: From Reads to Genes
Raffaele Calogero - University of Torino, Italy

Computer Training Lab

18:10 Shuttle to the Hotel

ATC entrance

18:30

Dinner

ISG Hotel

Day 2 - Monday 3 February 2020
TimeSpeakerLocation
08:15

Bus from ISG Hotel to EMBL ATC entrance

ISG Hotel bus stop

08:30 – 10:00

Lecture: Differential expression analysis: Two groups and multiple groups comparisons using DEseq2 and edgeR anova-like tools
Raffaele Calogero - University of Torino, Italy

Computer Training Lab

10:00 – 10:30

Coffee break

Computer Training Lab

10:30 - 12:30

Practical: Differential expression analysis: Two groups and multiple groups comparisons using DEseq2 and edgeR anova-like tools
Raffaele Calogero - University of Torino, Italy

Computer Training Lab

12:30 - 13:30 Lunch

EMBL Canteen

13:30 - 15:00

Lecture: P-values and multiple testing correction
Hyungwon Choi - National University of Singapore, Singapore

Computer Training Lab

15:00 - 15:30 Coffee break

Computer Training Lab

15:30 - 18:00

Lecture: Ribosome profiling
Gerben Menschaert - University of Ghent, Belgium

Computer Training Lab

18:00 - 19:00

Dinner

EMBL Canteen

19:00

Shuttle to the Hotel

ATC entrance

Day 3 - Tuesday 4 February 2020
TimeSpeakerLocation
08:45

Bus from ISG Hotel to EMBL ATC entrance

ISG Hotel bus stop

09:00 - 10:30

Lecture: Ribosome profiling
Gerben Menschaert - University of Ghent, Belgium

Computer Training Lab

10:30 - 12:00

Lecture: Introduction to Proteomics
Jeroen Krijgsveld - DKFZ, Germany

Computer Training Lab

12:00 - 13:00

Lunch

EMBL Canteen

13:00 - 14:30

Lecture: Quantitative proteomics: SILAC and other MS1-based approaches
Jeroen Krijgsveld - DKFZ, Germany

Computer Training Lab

14:30 - 15:00

Coffee Break

Computer Training Lab

15:00 - 16:30

Lecture: Quantitative proteomics: TMT
Mikhail Savitski - EMBL Heidelberg, Germany

Computer Training Lab

16:30 - 18:00

Lecture: Bioinformatics for proteomics
Lennart Martens - University of Ghent, Belgium

Computer Training Lab

18:00 - 19:00

Dinner

EMBL Canteen

19:00

Shuttle to the Hotel

ATC entrance

Day 4 - Wednesday 5 February 2020
TimeSpeakerLocation
08:45

Bus from ISG Hotel to EMBL ATC entrance

ISG Hotel bus stop

09:00 - 10:30

Lecture: Bioinformatics for proteomics
Lennart Martens - University of Ghent, Belgium

Computer Training Lab

10:30 - 11:00 Coffee Break

Computer Training Lab

11:00 - 12:30

Practical Session: Turning data into information-peptide and protein identification, database searching
Lennart Martens - University of Ghent, Belgium

Computer Training Lab

12:30 - 13:30

Lunch

EMBL Canteen

13:30 - 15:00

Lecture: Introduction to MaxQuant; analysis of MS data
Daria Fijalkowska - University of Ghent, Belgium

Computer Training Lab

15:00 - 15:30

Coffee Break

Computer Training Lab
15:30 - 17:30 Practical Session: Proteomics data interpretation
Daria Fijalkowska - DKFZ, Germany

Computer Training Lab

17:30 - 18:00

Shuttle to ISG Hotel

ATC entrance

18:00 - 18:30

Shuttle downtown

ISG Hotel bus stop

19:00

Dinner Downtown

Day 5 - Thursday 6 February 2020
TimeSpeakerLocation
08:45

Bus from ISG Hotel to EMBL ATC entrance

ISG Hotel bus stop

09:00 - 10:30

Lecture: Bioinformatic tools for data comparison and integration
Matt Rogon - EMBL Heidelberg, Germany

Computer Training Lab

10:30 - 11:00

Coffee Break

Computer Training Lab

11:00 - 12:00

Practical: Introduction to Cytoscape
Manjeet Kumar - EMBL Heidelberg, Germany
Livia Perfetto - EMBL-EBI Hinxton, UK
Matt Rogon - EMBL Heidelberg, Germany

Computer Training Lab

12:00 - 13:00

Lunch

EMBL Canteen

13:00 - 14:30

Practical: Introduction to Cytoscape
Manjeet Kumar - EMBL Heidelberg, Germany
Livia Perfetto - EMBL-EBI Hinxton, UK
Matt Rogon - EMBL Heidelberg, Germany

Computer Training Lab

14:30 - 15:00

Coffee Break

Computer Training Lab

15:00 - 16:30

Practical: Introduction to Cytoscape
Manjeet Kumar - EMBL Heidelberg, Germany
Livia Perfetto - EMBL-EBI Hinxton, UK
Matt Rogon - EMBL Heidelberg, Germany

Computer Training Lab

16:30 - 17:30

Lecture and Practical: Enrichment analysis
Manjeet Kumar - EMBL Heidelberg, Germany
Matt Rogon - EMBL Heidelberg, Germany

Computer Training Lab

17:30

Shuttle to ISG Hotel

ATC entrance

17:30 - 18:00

Shuttle downtown

ISG Hotel bus stop

18:00
Free evening

Day 6 - Friday 7 February 2020
TimeSpeakerLocation
08:45

Bus from ISG Hotel to EMBL ATC entrance

ISG Hotel bus stop

09:00 - 10:00

Application talk: Network-oriented integrative multi-omics analysis of tissues and fluids - case studies in cancer and cardiovascular diseases
Hyungwon Choi - National University of Singapore, Singapore

Computer Training Lab

10:00 - 16:00

Practical Session: Data integration
Matt Rogon - EMBL Heidelberg, Germany

Computer Training Lab

12:30 - 13:30

Lunch

EMBL Canteen

13:30 - 16:00

Practical Session: Data integration
Matt Rogon - EMBL Heidelberg, Germany

Computer Training Lab

16:00

Shuttle to Train Station and Crown Plaza Hotel

ATC entrance